XLOC_022461


Basic Information

Item Value
gene id XLOC_022461
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31253300 ~ 31266621 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044299
GTCTAATAATGCTAAACCACAGAGGCGCAGGTGCCAAAACCGAAACCTCCCGCATGTAAATTTCATATTCAGTTTTCAAAGCAACGCTTACACAACGCACAACACGCTAAGAGTTTCGACGATCTCTTCCCGTTTGTCTTTGTGAAGACAGTGAAGTCAGTCAGTGTTGATTTGATTGTACTGAAGTTCTAAGTGATGCCCCAGCTCACGTCAGGTGTGATCTTGCAGCTGACGCTCCTGCTGTCCGCTTTACCTGCGCAGTATCTCATCTCCAGGTGGACAGGAAGAACCGCCACACAGCGACACATCGCCACTCAGACAATCATCGACACATGGAGCACCATGAGGAAATCCTACCTGAACACCACTGTTTGGGTTGACTGGATAAATACATGGATTCCCAAACTACCGTCATttggagaagaagaagaacagtACCAAACACTGGAAGAAGCTTTTGCCATTGAGCTGTTGATGCACGATAATGAGCATGGCTACTTTGCAGTCTCAAAGGATGTGCGAAGCCCCAGACCAGCATATGTGCTGCATCGTGTAGGTGAAGTTGTTCTGGAGACTCAAAATAAAATGATTGGTGTGATCGTGGGCTGGGATGCAGGACTCCGAGCCCCTCCAGAGTGGatcaaaagaaagaaatacacaGACACAGAGCTGGAGAGAGCAAAGGACACTCCTCATTACAGAATTCTCTTCAGTGGACCAGATTCCTCATCAATATTGATCGGATACATTCCCCAGTATAATGTGAAGATTTTTCGTGGCTTTGAGCTGGACATTGCAACTCTAGAGCATTATTTTTCATACTTCAATGGGGAAACATTTGTCATGCAGGAATGGCTGCAGGAAATCTACCCTCATGACTGAACCAGCACAAACACTTTAAAACCGGAAGTCTGTTACTTTCCATTGACAGTATTGATTCTTTTAATGCAACAAGGAAAAGATCAAAAAGGAAGCAAGTACATTTGAGAGAGTTTTACTATAGGCAGCCCCAAATACATAAACACTGAGTAATTGTACTTATTAAACTTGTTGAATATTTGTGTCAGCTTTCTCAGGGCAGAATAGTAAAAAATTCTATTATCACATTTTTAGAATCATATTAATTTCAAGCATTTGTAAAGTTATGAGAAAAACTAATTGGGATGTCAATTAGTTTAATTGTAGTCTAAATTTAATGTccaaccggccactttattaggtacaccttactagtactgggttggacccacttttgccttcagaactgccttaatcctgctTTAAGATTTAATATGGCACATGGCGCTGGAAGTAGAagtagaagatgggtacactgtggtcataaagggatggacatggatggacatactcaggtaggctgtggcgttgacatgatgctccgtcagtaccaatgggcccaaagtgtgccaagaaaatatcccccacaccattacaccaccaccagcctgaaccgttgatacaaagcaggatggatccatgctttcatattgttgacttCAAAATTCTGatccgaccatctgaatgtcgcagcagaaatcgagactcatcagaccaggcaatgtttttccaatatattgtccaattttggtgagtctgttcgaattgtagcctcagtttcctgttcttatctgacaggagtggcacccggtgtggtcttctactgctgtagcccatccgcctcaaggttgttgtgcattcagagatgctcttttgcattcctcggttgtaacgagtgcttatttgagttactgttgcctttgtatcagctggaaccagtctggctattctcctttgacctctggcatcaataaggcatttgatCCCACAGAAATGCTGCTCAGaggttattttctctttttcggatcattctctgtaaacccctgGAGATGGTTatgcatgaaaattccagtagatcagcaatgtctgaaatactcagaacagcccatgtcgcatcaacaaccatgccacgttcaaagtcacttaaatcacctttcttccccattctgatgctcagtttgaactgcagcagttcgtcttgactttgtctacatgcataaatgcattgagttgatgcCATGTGATTAGaagtttgcattaacaagcagttggacaggtgtacctaataaagtggccagtgagtgtattttataATAGTGTTTTCCAAcactgttcctgaaggcacaccaacagtacacattttcaacctctcccttaTCAAACATACCTcgatcaactcatcagaacataagaagagactccaaaacctgaagttaatgggtcagattAGGGAGACTTCTAAAATATGTAGGcctactgttggtgtgccttcaggaacaggctTGGGAAACATTGTTTTAATATGACAGTGGATTAATATGCACATGTTGTTTTGACAGGTAATATGGTTTGCAGAATGTGATTAGTTATGATCAAATGTTTTTAGttattgtgatatttatttaaatcaaaaaaatgaatgatttgttGTATAAAACAGTATTGAGAATGGGATAAACTGTGTTCACCCATAtggtaaaatattatatttcctggccaaaatatattttaaatatatgttagatatatgctgtatatgtattgtttaataaaatctaTTTTTGAAATGG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0048747 muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0072359 circulatory system development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0035295 tube development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:1902667 regulation of axon guidance biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044299 True 2648 lncRNA 0.41 7 31253300 31266621

Neighbor

gene id symbol gene type direction distance location
XLOC_022460 si:ch211-197l9.5 coding downstream 192950 31041058 ~ 31060350 (-)
XLOC_022459 osbpl2a coding downstream 292794 30937757 ~ 30960506 (-)
XLOC_022458 NA coding downstream 332289 30906424 ~ 30921011 (-)
XLOC_022457 myt1a coding downstream 465368 30767310 ~ 30787932 (-)
XLOC_022456 pcmtd2a coding downstream 488981 30755804 ~ 30764319 (-)
XLOC_022462 phip coding upstream 9541 31276162 ~ 31346387 (-)
XLOC_022463 hmgn3 coding upstream 91467 31358088 ~ 31372807 (-)
XLOC_022464 lca5 coding upstream 113986 31380607 ~ 31400792 (-)
XLOC_022465 CR759830.3 coding upstream 135198 31401819 ~ 31403708 (-)
XLOC_022466 NA coding upstream 154190 31420811 ~ 31423522 (-)
XLOC_022453 CR456642.2 non-coding downstream 554613 30517199 ~ 30698687 (-)
XLOC_022454 CR456642.1 non-coding downstream 645199 30607983 ~ 30608101 (-)
XLOC_022451 NA non-coding downstream 1194124 30054434 ~ 30059176 (-)
XLOC_022449 NA non-coding downstream 1242481 30009263 ~ 30010819 (-)
XLOC_022472 BX927365.1 non-coding upstream 426747 31693368 ~ 31717710 (-)
XLOC_022474 BX927365.2 non-coding upstream 488131 31754752 ~ 31754868 (-)
XLOC_022480 NA non-coding upstream 740284 32006905 ~ 32007796 (-)
XLOC_022482 NA non-coding upstream 844697 32111318 ~ 32141320 (-)

Expression


Co-expression Network