antiprot1 (antiprot1)


Basic Information

Item Value
gene id antiprot1
gene name antiprot1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 32121260 ~ 32123842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124397.1
CTCCGGCAAAGAGGACATTGGAGgtagATAAAATGTGGGGTATATCTTATTGTACGATAGTGGCTGTGCTGCTCTGCGTGGCCTTGGCAGCGCCCCATGACGGGGACCACGCCGGTCACACAGaagaccaccaccaccacctccaccacatcGCTGGCGAGGCCCACCCTCAGCACAGCCACGGGGACGAAGAGTCCTGCCACAAGCTGGCGCCCCACAACGCAGACTTCGCCTTCACCCTGTACAGGAGCCTGAGCAAAGCCAACACCGAGAACATGAAtattttcttctctcctctgggCATTGCCACTAGTCTGGCTATGCTGTCCCTTGGGGCTAAGGGAGACACCCACAGCCAGCTGTACTCCACTCTGGGCTACGGCGCATTCACACCGGAGCAGGTGAACAATGCTTACGAGCACCTGTACCACATGTTGGGCCACACTGGGGAGGCCATGCAGCTGGACATGGGCAATGCCTTAGCTCTGAGGGACGGCTTCAAGCCCCTAGCCAAGTTCCTCGAGGACGCCAAGCACTTCTACGCCAGCGAAGGCTTCACGGTCGACTTCAAGAACCCAGCTGAGGCTACCGCCGAGATCAACAAGTTCATCGCCAAGAAGACCCAGGACAAGATCACGGACATGGTGAAGGATCTGGACCCTGATACGGCCATGATGCTCATCAACTACGTCTTCTTCAGAGGGAAGTGGGATAAGCCCTTCGATGCCACGCTGACCCACAAGGCTGACTTCAAAGTGGACGAGAACACCAAGGTGCAGGTGGACATGATGAAGAGGACGGGTCGTTATGAGTTGTATCAGGACCAGGATAACTTCACCACCGTGGTCATACTGCCTTACAAAGGCAACTCCTCAATGATGGTGGTCCTGCCCAATGATGGAAAGATGGAGCATGTGGAGGCCTTCATCAACAAGGACTACCTGAAGCACGTGCACGAGCACCTGTTCAGGACCAATGTGGATATCTTCATGCCCAagttctccacctctacctcgtACTCCCTGGGAGATCATCTGAAAGACATGGGTGTGGTCAGTGCCTTCGGTGACTCAGCTGACTTCTCTGCCATCTCTGAGGATACCAAACTGAAGGTGTCCAAGGTTACCCACAAGGCTGTGCTGAGCGTAGATGAGAAGGGGACTGAGGCGGCCGCTGTAACTACGATAGAGATCATGCCTATGTCTCTCCCAGACACCATCATGCTCAACAGGCCCTTCCTGCTCTTCATCCTGGAGGACTCTACCAAGAGCATTGTCTTCATGGGCAAAGTCACCAATCCCAGCTCCAAATGAactacagagagggagggaaagggagggagagtgtgactAACATCTGAGGAGATTTAAGAAAGGTTTAAGGAAAGGTTCACGCTTTAACAAGTGGCAAAACATATCTGTATCTGACTTTGCGGTTCGCAGTTGTGGCATTCAAGTGTCGGCCATTTTGTCTACATGTGTTTTTATATCAACTCTATACCTAaaagcagaggtgtgtgtgtatctgtgtgagtTTGTAGTTAGCTTAAAATTGTACGGATGTCCATGCTGGTTTGTTGATAGTGATGTGTCATGGTTATGTCTCTGGAAGTTGTGTTTCTAACGCATTTTCAAAAAATAAACACGTCTCCCAACAACA

Function

NR:

description
alpha-1-antiproteinase-like protein precursor

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03984 SERPINA1, AAT; alpha-1-antitrypsin

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124397.1 True 1659 mRNA 0.52 5 32121260 32123842

Neighbor

gene id symbol gene type direction distance location
LOC118964510 NA coding upstream 28814 32092160 ~ 32092446 (+)
LOC110521080 ints9 coding upstream 38932 32072761 ~ 32082328 (+)
tdrd6 tdrd6 coding upstream 68418 32028040 ~ 32052842 (+)
LOC110522501 LOC106571602 coding upstream 105390 31980595 ~ 32015870 (+)
LOC118964494 NA coding upstream 312877 31803746 ~ 31808383 (+)
LOC110522505 LOC106608111 coding downstream 410739 32534581 ~ 32541487 (+)
LOC110520986 NA coding downstream 542446 32666288 ~ 32699603 (+)
rnh1 rnh1 coding downstream 720092 32843934 ~ 32850818 (+)
LOC110520987 NA coding downstream 730215 32854057 ~ 32865131 (+)
LOC118964496 NA coding downstream 786868 32910710 ~ 32912647 (+)
G343175 NA non-coding upstream 85927 32035123 ~ 32035333 (+)
G343153 NA non-coding upstream 94734 32026217 ~ 32026526 (+)
G343068 NA non-coding upstream 199166 31921553 ~ 31922094 (+)
G343051 NA non-coding upstream 220215 31900581 ~ 31901045 (+)
G343050 NA non-coding upstream 223043 31897935 ~ 31898217 (+)
G343242 NA non-coding downstream 57442 32181284 ~ 32182676 (+)
G343394 NA non-coding downstream 80321 32204163 ~ 32204376 (+)
G343396 NA non-coding downstream 81582 32205424 ~ 32206262 (+)
G343404 NA non-coding downstream 91299 32215141 ~ 32215402 (+)
G343423 NA non-coding downstream 104785 32228627 ~ 32228998 (+)
G342707 LOC106608120 other upstream 335054 31785865 ~ 31786206 (+)
G342571 NA other upstream 669784 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 702004 31417955 ~ 31422086 (+)
G342538 NA other upstream 738511 31381826 ~ 31382749 (+)
G339928 NA other upstream 2784321 29335369 ~ 29336939 (+)
G343958 NA other downstream 571144 32694986 ~ 32704371 (+)
LOC110521085 LOC100380634 other downstream 1348210 33469529 ~ 33489784 (+)
G344647 NA other downstream 1428285 33552127 ~ 33554003 (+)
LOC110522521 NA other downstream 1461136 33584945 ~ 33586386 (+)
LOC110522536 LOC105024319 other downstream 2267131 34390869 ~ 34394175 (+)

Expression


Co-expression Network