LOC110520986


Basic Information

Item Value
gene id LOC110520986
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 32666288 ~ 32699603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473072.2
AGAGGTCTTTAAGACAAGTGAAAGGTTGATAGGTAAAACCTTGTGCTCTCTGTCACAATTGAAAGGTTGAGCAGAACACAAGCCTGCTTTGAATAACAGCTCCAATCCTCACAACGTCCTCTCTGCGGCCCCGACAGCCTGCCTAATGATTACCAACTTGGCACGAGCCTTTCGACTCAATTCCCCAAGAGACGGGAATTAAAGGAAGAAGGACAGGAAAGGAGAAAAaaggaaaacaaaacaacaacatgtggTAGTCTGAATGGCGCACGTCAAAGCCTGCAGTCACCTCGCATCCTGGAAAGGAGCACATTGAAAGAAGAAACATCATTGAGTTTTTTGTTTTCATCTAGCTAAAGTGCTTGTACTGCAGAATCAGCCAATGCTGTGTGCTCTGCTTGTTACTTCGGCACTCTCATTTACATATAGAGCACCCATGCTTCAGAAGTGAGACCAGACCTGACAGGAGAGGCGAGGACTGAATTCCAGACATAGTTACACCGGAGATGGAGTTGAAAAGAGgacACTGATGGACTGAGGAGGACAACACTTGTGGACTGAGGAGGATGACACTGTAGACATGTCACCTGTACACCAGGCAGCGtcgtggaatattctaatcaaCAGTCAGTAGAAGCTGTCCCCACAGTGTCAAGGACAGACAGGGGCTGGAgagactggacaacatgctgctAAGGCTGCAGACAGGGCTGAAGGACAATCACACCCTCACCCTCACACCTCACAGCCGAGGTGACCTTCAATGTACTGGATGACTATTCTAGAAATGTTTGGCATTGTTACTGGAAAGGTAGAAAGTAGGATATGACTTGGTTTGTTTGTGTTGCACCAGAATGCAAGGGCAATTAGCCAGgcttgggtaggttactttctaaatgtaatccat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106611146

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473072.2 True 907 mRNA 0.47 4 32666288 32699603

Neighbor

gene id symbol gene type direction distance location
LOC110522505 LOC106608111 coding upstream 124801 32534581 ~ 32541487 (+)
antiprot1 antiprot1 coding upstream 542446 32121260 ~ 32123842 (+)
LOC118964510 NA coding upstream 573842 32092160 ~ 32092446 (+)
LOC110521080 ints9 coding upstream 583960 32072761 ~ 32082328 (+)
tdrd6 tdrd6 coding upstream 613446 32028040 ~ 32052842 (+)
rnh1 rnh1 coding downstream 144331 32843934 ~ 32850818 (+)
LOC110520987 NA coding downstream 154454 32854057 ~ 32865131 (+)
LOC118964496 NA coding downstream 211107 32910710 ~ 32912647 (+)
LOC110521081 LOC106571614 coding downstream 265604 32965207 ~ 33118062 (+)
LOC110522507 LOC106608145 coding downstream 420046 33119649 ~ 33137510 (+)
G343919 NA non-coding upstream 44627 32621404 ~ 32621661 (+)
G343910 NA non-coding upstream 48798 32617254 ~ 32617490 (+)
G343879 NA non-coding upstream 66293 32599180 ~ 32599995 (+)
G343861 NA non-coding upstream 78693 32587390 ~ 32587595 (+)
G343845 NA non-coding upstream 91977 32574036 ~ 32574311 (+)
G344041 NA non-coding downstream 45388 32744991 ~ 32745199 (+)
G344042 NA non-coding downstream 45774 32745377 ~ 32745749 (+)
G344121 NA non-coding downstream 140509 32840112 ~ 32843737 (+)
G344224 NA non-coding downstream 202514 32902117 ~ 32902390 (+)
G344307 NA non-coding downstream 370388 33069991 ~ 33072101 (+)
G342707 LOC106608120 other upstream 880082 31785865 ~ 31786206 (+)
G342571 NA other upstream 1214812 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 1247032 31417955 ~ 31422086 (+)
G342538 NA other upstream 1283539 31381826 ~ 31382749 (+)
G339928 NA other upstream 3329349 29335369 ~ 29336939 (+)
LOC110521085 LOC100380634 other downstream 772449 33469529 ~ 33489784 (+)
G344647 NA other downstream 852524 33552127 ~ 33554003 (+)
LOC110522521 NA other downstream 885375 33584945 ~ 33586386 (+)
LOC110522536 LOC105024319 other downstream 1691370 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 1837398 34536950 ~ 34541410 (+)

Expression


Co-expression Network