XLOC_022463 (hmgn3)


Basic Information

Item Value
gene id XLOC_022463
gene name hmgn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31358088 ~ 31372807 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044304
AAAGCCGAGGGTAGAGTCTGAGGTCTGCATAATATTACCATGTTATTACCAGAGGTGTTTTAGATATTGATCCTGTATCCGCTGGTAGTTAAACTCACTCCCTCACCTCACAGGTCCATACCTGCTTTTCTAATTTACTAAACACAAGTGACaggaaaatttgtaaaaatgccCAAGAGGAAGTCACCTGAGGGAGCAGAGGCCAAAGACGCCACCAAAGTTACAAAGCATGAGCCCACTCGGAGGTCAGAGCGTCTTTCCTCAAAACCAGCTCCACCTAAACCTGAACCAAAAGCCAAAAAGCCAGCTGCCAAGAAGCCATCCAATGATAAAGCGGTAAAGGAGAAGAAGGGCGGAGCCAAAGGAAAGAAAGAGGAGAAAGATTCTGTGCCCACTGCTAATGGAGAGACCAAGCCAGAGGAGGAAACTGAGACGCCCAAGACTGAGGCCGAGGGAAAAGAGTGATTGAAGTTGTTTTCTGGAataacagaactttttttttattcctatCGAGTATTTTGTAAAACGCAAACTTTTTTTTAGACTTCCCGTACTAGATTTCCTTAGCTAAAAGTCGACTCACACTCCCCGCAGAAGCACCATCTCCTATATCTGACAGAAGGAGAGATTCATTTCAAGAAAAACCAACAGTTATTcttgaacaaaaattttcaccAGCAGCTCGCCTGCCAAATGCAGCCACTTGGAACATGTCATATCCTATCATGTTAAAAGCATCCGGATCATCATTTTCCACTAGAGAGCATAGCCTGCGCTTCACGGTTTTACGGCTCTGTCTTTGAGTCTTGTTTAATTGAGTATCTTATAAAAAGTGTCAGAGAAAGGGAGCATTTGAGTAGTaaccactattttttttttttgcttttttggtaAGAAGCTCCTTTGTAGCATTTTGAGATTCAAGCGTGTTTTAAAATGGCTGAATTAAACATGACCCTTAACAGTGGCAGATTTCCATAGCAATAAACAAGTGGTGCTTTGTGCTAGAAGGTTAGGAAAAAACTACAAGATCCCAGTCTCAGACAAATGTAAAAGTCCACAGAACTGGTTTGAGATATCCTCtctgtaaaatgttttcaaataaaaagatGAATAACCGGTCA
>TCONS_00044305
TGAGGTCTGCATAATATTACCATGTTATTACCAGAGGTGTTTTAGATATTGATCCTGTATCCGCTGGTAGTTAAACTCACTCCCTCACCTCACAGGTCCATACCTGCTTTTCTAATTTACTAAACACAAGTGACaggaaaatttgtaaaaatgccCAAGAGGAAGTCACCTGAGGGAGCAGAGGCCAAAGACGCCACCAAAGTTACAAAGCATGAGCCCACTCGGAGGTCAGAGCGTCTTTCCTCAAAACCAGCTCCACCTAAACCTGAACCAAAAGCCAAAAAGCCAGCTGCCAAGAAGCCATCCAATGATAAAGCGGTAAAGGAGAAGAAGGGCGGAGCCAAAGGAAAGAAAGAGGAGAAAGATTCTGTGCCCACTGCTAATGGAGAGACCAAGCCAGAGGAGatctgcgTGTCTCGCTCATCTGTCAGTGTGTCATCATGGAGAAGTTCCGCCCCCTCCTTCCTGTCCATCCGCGGGCAGAGTGAGAGTGTTAGAGTAAAGGGAAACTGAGACGCCCAAGACTGAGGCCGAGGGAAAAGAGTGATTGAAGTTGTTTTCTGGAataacagaactttttttttattcctatCGAGTATTTTGTAAAACGCAAACTTTTTTTTAGACTTCCCGTACTAGATTTCCTTAGCTAAAAGTCGACTCACACTCCCCGCAGAAGCACCATCTCCTATATCTGACAGAAGGAGAGATTCATTTCAAGAAAAACCAACAGTTATTcttgaacaaaaattttcaccAGCAGCTCGCCTGCCAAATGCAGCCACTTGGAACATGTCATATCCTATCATGTTAAAAGCATCCGGATCATCATTTTCCACTAGAGAGCATAGCCTGCGCTTCACGGTTTTACGGCTCTGTCTTTGAGTCTTGTTTAATTGAGTATCTTATAAAAAGTGTCAGAGAAAGGGAGCATTTGAGTAGTaaccactattttttttttttgcttttttggtaAGAAGCTCCTTTGTAGCATTTTGAGATTCAAGCGTGTTTTAAAATGGCTGAATTAAACATGACCCTTAACAGTGGCAGATTTCCATAGCAATAAACAAGTGGTGCTTTGTGCTAGAAGGTTAGGAAAAAACTACAAGATCCCAGTCTCAGACAAATGTAAAAGTCCACAGAACTGGTTTGAGATATCCTCtctgtaaaatgttttcaa
>TCONS_00044306
atgccCAAGAGGAAGTCACCTGAGGGAGCAGAGGCCAAAGACGCCACCAAAGTTACAAAGCATGAGCCCACTCGGAGGTCAGAGCGTCTTTCCTCAAAACCAGCTCCACCTAAACCTGAACCAAAAGCCAAAAAGCCAGCTGCCAAGAAGCCATCCAATGATAAAGCGGTAAAGGAGAAGAAGGGCGGAGCCAAAGGAAAGAAAGAGGAGAAAGATTCTGTGCCCACTGCTAATGGAGAGACCAAGCCAGAGGAGatctgcgTGTCTCGCTCATCTGTCAGTGTGTCATCATGGAGAAGTTCCGCCCCCTCCTTCCTGTCCATCCGCGGGCAGAGTGAGAGTGTTAGAGTAAAGGGTACG

Function

symbol description
hmgn3 Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II and regulation of insulin secretion involved in cellular response to glucose stimulus. Predicted to be located in chromatin. Predicted to be active in nucleus. Is expressed in central nervous system; lens; mucus secreting cell; and otic placode. Orthologous to human HMGN3 (high mobility group nucleosomal binding domain 3).

GO:

id name namespace
GO:0061178 regulation of insulin secretion involved in cellular response to glucose stimulus biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0031492 nucleosomal DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041114-180 Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II and regulation of insulin secretion involved in cellular response to glucose stimulus. Predicted to be located in chromatin. Predicted to be active in nucleus. Is expressed in central nervous system; lens; mucus secreting cell; and otic placode. Orthologous to human HMGN3 (high mobility group nucleosomal binding domain 3).

Ensembl:

ensembl_id ENSDARG00000036754

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044304 False 1124 mRNA 0.41 6 31358088 31372807
TCONS_00044305 False 1183 mRNA 0.42 7 31358111 31372789
TCONS_00044306 True 360 mRNA 0.52 6 31362589 31372639

Neighbor

gene id symbol gene type direction distance location
XLOC_022462 phip coding downstream 11701 31276162 ~ 31346387 (-)
XLOC_022461 NA coding downstream 91467 31253300 ~ 31266621 (-)
XLOC_022460 si:ch211-197l9.5 coding downstream 297738 31041058 ~ 31060350 (-)
XLOC_022459 osbpl2a coding downstream 397582 30937757 ~ 30960506 (-)
XLOC_022458 NA coding downstream 437077 30906424 ~ 30921011 (-)
XLOC_022464 lca5 coding upstream 7800 31380607 ~ 31400792 (-)
XLOC_022465 CR759830.3 coding upstream 29012 31401819 ~ 31403708 (-)
XLOC_022466 NA coding upstream 48004 31420811 ~ 31423522 (-)
XLOC_022467 zgc:153284 coding upstream 53686 31426493 ~ 31436524 (-)
XLOC_022468 eya4 coding upstream 66906 31439713 ~ 31512497 (-)
XLOC_022453 CR456642.2 non-coding downstream 659401 30517199 ~ 30698687 (-)
XLOC_022454 CR456642.1 non-coding downstream 749987 30607983 ~ 30608101 (-)
XLOC_022451 NA non-coding downstream 1298912 30054434 ~ 30059176 (-)
XLOC_022472 BX927365.1 non-coding upstream 320561 31693368 ~ 31717710 (-)
XLOC_022474 BX927365.2 non-coding upstream 381945 31754752 ~ 31754868 (-)
XLOC_022480 NA non-coding upstream 634098 32006905 ~ 32007796 (-)
XLOC_022482 NA non-coding upstream 738511 32111318 ~ 32141320 (-)

Expression


Co-expression Network