LOC110522508 (ccr6)


Basic Information

Item Value
gene id LOC110522508
gene name ccr6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33140884 ~ 33145169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600950.2
atactttcaatacatttttaatttggactgtaacaaaatgtggaataagtcaaggggtatgaatacttttcaaaggcactgtaaaatgtatgtatgcTTTATTCACATGATAGTACTAATCAGTGACACCGCTTTGCTGAATATCAAGTACTTTGATCTTTGAGACTTTATCCCCCATGTAATGCATGTCTGCAAAATAATGCACACTGTTTCCAGTGTACCTAATGTTCAAGATAGTTGAATGAATAGAAGTGAGCAATCAACAGTCAATATGTTTCAAAGGTCAATAAAGAGTTAAGGTGTAATGAGCATGTTTCTTGAGTTCTTCTGCTCAGATCGTGTGATCTGCAGGTGTCAGCCAACAGGTTATTATTTGAGAACGTCAAGTGCATGCTGCGACACTGCTTGGTTCCACAGCTGACAGTCTAGGTTGATCAAACGGAGAACAACTTGACTTCTTCCTGTTTTCTCTAATTGAGAGATTCTGAGGTTCACAGCTTCCTTTCAAACTTGGCTTAGAATAGTCCCAAGAGTATTTTGAAACGATTACTCCGTTATTCTGGAGAAAATGAACTATACGGATAATGCAGAGGAAACAGTTAACAATTCAGCGGCGTATGACTATGATTGGGTGGAGCCATGTAATATGGAAGAAAACAACAGTGTGGAGAGAGTGGTGCGACTCTACATCCACTCTGTCATCTGTATCCTGGGTTTACTGGGCAACATCCTGGTGATCGTCACCTACGCCTTCTACAAGAAGGCCAAGTCCATGACGGACGTTTACCTTCTGAACGTGGCCATAGCAGACATGCTGTTTGTGGTGGCTCTACCCCTGATCATCTACAATGAGCAGAGTGACTGGGCCATGGGGATGGTGGCCTGTAAGGTTCTCCGTGGGGCCTACAGCGTCAACCTGTACAGTGGCATGCTGTTGTTAGCTTGTATTAGCACCGACCGCTACATTGCTATTGTCCAGGCCCGTCGCTCCTTCCGGCTCCGCTCCCTGATCTACAGCCGCATCATCTGCGCTGCAGTCTGGAGCCTggccctgctcctctctgtccccacctTTGTCTACTACGAGCGTTATGTGCCTGCACACAGCACCATTGGAAATTATTATGACAACTATGATAACAACAATGCTACAACACTGTTTGATCTGGAGAACACCATATtcttagaggaggaggaggaggactatGTAGTCTGCAACTTCAGGTTCCCAGACAACGCCACGGCCCGTCAGATGAAGATCCTGGTCCCGAGCACCCAGATGGCGGTGGGCTTCTTCCTGCCCCTGTTGGTCATGGGCTTCTGCTACGCCAACATCATTGTCACGCTGCTGCGTGCCAAGAACTTCCAGAGGCACAAGGCGGTGCGCGTGGTGCTGGCTGTGGTGGTCGTGTTTATCATCTGTCATCTGCCCTACAACGCCGCACTGCTCTACGACACGGTCAACAAGTTCCAGATCCAGACCTGCAGTCAGGTGGATACCACCGAAGTGGCCAAGACAGTGACAGAAACGGTGGCCTACCTGCACTGCTGCCTCAACCCGGTCCTATACGCCTTCATCGGGGTGAAGTTCAGGAACCACTTCAGGAAGATTGTGGAGGATGTGTGGTGCATTGGGAAGAGGGTCATGAATCCCCGACGCTTCTCGAGGGTCACGTCAGAGATGTATGTCTCCACTGTCCGCAGGTCTATGGATGGATCCTCTACAGACAACGCATCTTCTTTCACCATGTGAGGACGAGACCCTGTGGTGGAGACTGCTACTGCTGTGAACCCTAGCGCCGTCTGATACATTTATCAATGTACCTATGCCATCTTTATTGAATGTTTCCATAAGCCTTACATGAAATAATCAATGTAAAATAACAAAAGTGTTTATTTAAATGATAACTACTGTAATGACAACTGTTTctacttgctgtttattgttTATGAATATGATATATCGGTTGTTGCTTTTATGCAGTTCTGTCTTTGGTTAATGCACAATTGTGGTTTATGTCTGTGTTTGAATGTATTTTGAAAGACgaaataaaaaatacttttttaTGGCCTATATTAATTTCCTAATGTATTTATTAACGGAAGGACAATACTGTGTAATTTGGGTTTCAGCCATGGCAAACTGCTCACAATTAGTAGAAGTAACAGCGTTGTTATTGTTACCCAGTAGATGGGGCCATTTACACTCTTTACACTATGCCTCTACACAGTCTGGAATGAAGCGTTGTAAAATCAGTGCGGAGACA

Function

symbol description
ccr6 Enables C-C chemokine binding activity and C-C chemokine receptor activity. Involved in calcium-mediated signaling; cell chemotaxis; and positive regulation of flagellated sperm motility involved in capacitation. Located in cell surface; sperm flagellum; and sperm plasma membrane. Biomarker of several diseases, including IgA glomerulonephritis; cutaneous T cell lymphoma; exanthem; psoriasis; and systemic scleroderma.

NR:

description
C-C chemokine receptor type 6-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function

KEGG:

id description
K04181 CCR6, CD196; C-C chemokine receptor type 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600950.2 True 2267 mRNA 0.45 2 33140884 33145169

Neighbor

gene id symbol gene type direction distance location
LOC110522507 LOC106608145 coding upstream 3374 33119649 ~ 33137510 (+)
LOC110521081 LOC106571614 coding upstream 22822 32965207 ~ 33118062 (+)
LOC118964496 NA coding upstream 228237 32910710 ~ 32912647 (+)
LOC110520987 NA coding upstream 275753 32854057 ~ 32865131 (+)
rnh1 rnh1 coding upstream 290066 32843934 ~ 32850818 (+)
LOC110522510 LOC106608180 coding downstream 213787 33358956 ~ 33380970 (+)
LOC110522512 LOC106568622 coding downstream 244703 33389872 ~ 33402155 (+)
LOC110522513 LOC106568623 coding downstream 259240 33404409 ~ 33405969 (+)
LOC110522514 LOC106571629 coding downstream 263944 33409113 ~ 33411055 (+)
LOC110521085 LOC100380634 coding downstream 324360 33469529 ~ 33489784 (+)
G344262 NA non-coding upstream 28166 33097802 ~ 33112718 (+)
G344263 NA non-coding upstream 28716 33107793 ~ 33112168 (+)
G344264 NA non-coding upstream 29047 33106695 ~ 33111837 (+)
G344261 NA non-coding upstream 35573 33104317 ~ 33105311 (+)
G344319 NA non-coding upstream 37917 33098501 ~ 33102967 (+)
G344426 LOC105024815 non-coding downstream 6312 33151481 ~ 33155411 (+)
G344433 NA non-coding downstream 26256 33171425 ~ 33172270 (+)
G344441 NA non-coding downstream 36280 33181449 ~ 33185617 (+)
G344442 NA non-coding downstream 40659 33185828 ~ 33188665 (+)
G344443 LOC106608148 non-coding downstream 45433 33190602 ~ 33191272 (+)
G343958 NA other upstream 436513 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1354678 31785865 ~ 31786206 (+)
G342571 NA other upstream 1689408 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 1721628 31417955 ~ 31422086 (+)
G342538 NA other upstream 1758135 31381826 ~ 31382749 (+)
G344647 NA other downstream 406958 33552127 ~ 33554003 (+)
LOC110522521 NA other downstream 439809 33584945 ~ 33586386 (+)
LOC110522536 LOC105024319 other downstream 1245804 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 1391832 34536950 ~ 34541410 (+)

Expression


Co-expression Network