LOC110522510 (LOC106608180)


Basic Information

Item Value
gene id LOC110522510
gene name LOC106608180
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33358956 ~ 33380970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600953.2
gaaacataaccacCCTGTTACAGAGGCAATCCGAATCTCACGATTTATAGCTGGCTAAACTAACATCCTTCCTAGACGTGGTTATTGAGGGAAGTGGCCCTTTGAAGTTTTAAATAATCGAAGGACGACAGTGCCCGGTGGCCTCGATAACGAGCACAGCAGTGGAGGATATCTTGACAAGGAGCCAAAATGCTGCCTAGTACATTCCTTACTGGACCTTTGCGTATCATCTTGGTCGGGATCCTTGGTATAGGAGGATTTCTGACGCTGTTTGTAATGTACTATCAATCAGCTCCATCTCAGATCTGCCCTCCCCAACCTGCTTTGCCACGTCATTACTCAAAGCCACCTGAGAACAACTCCTTGTCTAAGAAGCAGCCAGAGCCAGACAAGCCCATCATGCTGTTGTGGTTCTGGCCTGAAAACCGCAGGTTTGATTTTAGAGATTGCACCACTTTCTTCAACATTGATGGCTGCCAACTGACAGATGACCGGTCTCTGTACAACAAGGCAGACGGGGTGCTCATCTTTCACAAATCCATCAAACATGATTTATCCAACTTGCCTCAATCACCTCGACCACCATTCCAGAAGTGGATCTGGTATCATGTGGAATCACCTACAAACACAATTAGAATACCTGGTCTAGAGAACCTTTTCAACTTGACCTTGAGTTATAGGGAAGATGCAGACATCCCTGTACGTTGGCGCTTAACTGCAAGGAAAGGCCAGGGTGAGGACTTTGTGCTGCCCAAGAAGGATAAATTAGTTTGCTGGATTGTGAGTAACAATAACCCTGCAACTGGAACAGCAGTAAGGGATAACTATTACACAGAACTTGTCAAACATATTAAGGTGGATGTCTATGGAAAAGCCTTTGCAAGATTCTTGAGATATGAGGACTACTTCTCAACACTCTCCAGCTGTAAGTTCTACCTCTCCTTTGAGAACTCAGTCCACAGAGACTACATCACTGAGAAGCTTAACGGACCACTTGCAGCAGGAACAGTGCCAGTAGTATTGGGCCCACCGAGACAGAACTATGAGGACTTTGTCCCGGGAGATTCCTTCATCCATGTTAATGACTTTCCCAATGCAAAAGCCCTGGCTGAATTCCTCCTGAAGTTGGACAAGGATGATGAGGCATATCTGCGCTACTTTCAGTGGCGTAGAAACTTATTTGCTCAGCAACATCTAATTCAACTGAGTCAAGAGTTCATCCAATCTATTTGTTATGCCTGTGACCATATAGGCAAACATAAGGAGTACAGGGTTGTGCACAATATTTACAAATGGTATTTTGGTTAATCAGACTTACATACTCTTCTGtgtatagtggggcaaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaaaatgaagcctgtaattttcatcataggtacacttcaactatgacagacaaaa
>XM_021600952.2
CGTGGCTTAGAAGGAAGTAACGCGATCTGGCTTGCCCCTCCCCGCTGAGGCAAACCTCTATTTCACCTTGACAATAATGCTATGTTTTCCAACTATAAGGGTGTCCAGaagttgttttttcccccttctcACACCCAGTGTAGTTGGAGGATCTTGTGAAACAGCTTCTCGTGGTTTCCTATCGCTTTATTGAACTGATGAGTAGGCCTACCAAAGTAACAGCTACATAGTTCTCATCGGGCGTGTGTATGAATGACTTGACCAGAAGCTCTGAATACGGCGTGACAAGAACAACCTGTTGACCGGAGCCAAAATGCTGCCTAGTACATTCCTTACTGGACCTTTGCGTATCATCTTGGTCGGGATCCTTGGTATAGGAGGATTTCTGACGCTGTTTGTAATGTACTATCAATCAGCTCCATCTCAGATCTGCCCTCCCCAACCTGCTTTGCCACGTCATTACTCAAAGCCACCTGAGAACAACTCCTTGTCTAAGAAGCAGCCAGAGCCAGACAAGCCCATCATGCTGTTGTGGTTCTGGCCTGAAAACCGCAGGTTTGATTTTAGAGATTGCACCACTTTCTTCAACATTGATGGCTGCCAACTGACAGATGACCGGTCTCTGTACAACAAGGCAGACGGGGTGCTCATCTTTCACAAATCCATCAAACATGATTTATCCAACTTGCCTCAATCACCTCGACCACCATTCCAGAAGTGGATCTGGTATCATGTGGAATCACCTACAAACACAATTAGAATACCTGGTCTAGAGAACCTTTTCAACTTGACCTTGAGTTATAGGGAAGATGCAGACATCCCTGTACGTTGGCGCTTAACTGCAAGGAAAGGCCAGGGTGAGGACTTTGTGCTGCCCAAGAAGGATAAATTAGTTTGCTGGATTGTGAGTAACAATAACCCTGCAACTGGAACAGCAGTAAGGGATAACTATTACACAGAACTTGTCAAACATATTAAGGTGGATGTCTATGGAAAAGCCTTTGCAAGATTCTTGAGATATGAGGACTACTTCTCAACACTCTCCAGCTGTAAGTTCTACCTCTCCTTTGAGAACTCAGTCCACAGAGACTACATCACTGAGAAGCTTAACGGACCACTTGCAGCAGGAACAGTGCCAGTAGTATTGGGCCCACCGAGACAGAACTATGAGGACTTTGTCCCGGGAGATTCCTTCATCCATGTTAATGACTTTCCCAATGCAAAAGCCCTGGCTGAATTCCTCCTGAAGTTGGACAAGGATGATGAGGCATATCTGCGCTACTTTCAGTGGCGTAGAAACTTATTTGCTCAGCAACATCTAATTCAACTGAGTCAAGAGTTCATCCAATCTATTTGTTATGCCTGTGACCATATAGGCAAACATAAGGAGTACAGGGTTGTGCACAATATTTACAAATGGTATTTTGGTTAATCAGACTTACATACTCTTCTGtgtatagtggggcaaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaaaatgaagcctgtaattttcatcataggtacacttcaactatgacagaca

Function

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600953.2 False 1445 mRNA 0.44 2 33358956 33380970
XM_021600952.2 True 1566 mRNA 0.44 2 33360028 33380967

Neighbor

gene id symbol gene type direction distance location
LOC110522508 ccr6 coding upstream 213787 33140884 ~ 33145169 (+)
LOC110522507 LOC106608145 coding upstream 221446 33119649 ~ 33137510 (+)
LOC110521081 LOC106571614 coding upstream 240894 32965207 ~ 33118062 (+)
LOC118964496 NA coding upstream 446309 32910710 ~ 32912647 (+)
LOC110520987 NA coding upstream 493825 32854057 ~ 32865131 (+)
LOC110522512 LOC106568622 coding downstream 8902 33389872 ~ 33402155 (+)
LOC110522513 LOC106568623 coding downstream 23439 33404409 ~ 33405969 (+)
LOC110522514 LOC106571629 coding downstream 28143 33409113 ~ 33411055 (+)
LOC110521085 LOC100380634 coding downstream 88559 33469529 ~ 33489784 (+)
LOC110522521 NA coding downstream 203975 33584945 ~ 33586386 (+)
G344494 NA non-coding upstream 91639 33267077 ~ 33267317 (+)
G344491 NA non-coding upstream 95144 33263564 ~ 33263812 (+)
G344478 LOC106608148 non-coding upstream 117775 33240441 ~ 33241181 (+)
G344475 NA non-coding upstream 120755 33237960 ~ 33238201 (+)
G344470 LOC106608148 non-coding upstream 126498 33232036 ~ 33232458 (+)
G344570 NA non-coding downstream 3617 33384587 ~ 33384812 (+)
G344571 NA non-coding downstream 3935 33384905 ~ 33385222 (+)
G344572 NA non-coding downstream 4937 33385907 ~ 33386112 (+)
G344578 NA non-coding downstream 27522 33408492 ~ 33408895 (+)
G344582 NA non-coding downstream 33437 33414407 ~ 33414607 (+)
G343958 NA other upstream 654585 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1572750 31785865 ~ 31786206 (+)
G342571 NA other upstream 1907480 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 1939700 31417955 ~ 31422086 (+)
G342538 NA other upstream 1976207 31381826 ~ 31382749 (+)
G344647 NA other downstream 171157 33552127 ~ 33554003 (+)
LOC110522536 LOC105024319 other downstream 1010003 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 1156031 34536950 ~ 34541410 (+)

Expression


Co-expression Network