LOC110522513 (LOC106568623)


Basic Information

Item Value
gene id LOC110522513
gene name LOC106568623
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33404409 ~ 33405969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600957.2
CAGATTTGTTAAAGAAAATATTTTCATACTTCCTGTGACAGTCAATTCAATTATTACCATAACACAATTTAGACAAGATTTCCGCGTTTGGGAAGACGGGATTTCACTCGAACAATCTTTTTGGGACCTCTCAAAAAAATCTAGCGAACTGTCGTGCACAAGTTGCCACGCATTCTTTCATTGCTGCATGACTCAGAAGCTCTACACATATGGAGCAAAAGCTTGCGGAGTTCAGGGCCCGAAGAAGGGCTGATGTGGCCGCTAGGAAGAGCGAATCTTTTCAAAAACAACCAATAACATATTCGGACAATGGCAGCACTTTGAAGTCAGACAGTTGCCAGTCATCAACAACTGATCCAGACACACAGGAGTTGACAGATAATCCAATCTCTGCTGTCCATCAGGCTATAAGGACTAAACATTGGGGGGATGACTGGCTGCTGGAGAGCACTCTGGGTCAATGGCTTGGTTCAAAGCGACTGGCTTTCACGAATCTGACTTTGCTGAAGGTGTTGCTTTGGCTGGTTCTACTTGGGCTGTTTGCCGAGCTGGAATTCGGGTTGCCTTTCTTCCTAATCTCCCTCTTCTACTGGCTGTATGAGGGGCTGCGGAGCCCAACTGCACGCCAACCTGGAGAAATGAGTGCTTACTCAGTGTTCAACCCAGACTGTCAGCCTCTCCTGGGTGCACTTACAGCTGAGcagctagagggagagatgggctACAGACCACTGGCCAACAGATGAAATCCCTCAAGACACTCAAACAACTGACTTTAATCTGAAATGGAATAGCTACTGTACTTTAAGCTTCCCATTGTACTAAAAAGGAACTGGCAATGTATTTGTTTGAATGAAGCACATTGCTGGTATTGATTTTGAAGTCAAATGGAGCCTATTCCATACTACAAGATCATTCACCACTAGTGCACATTGATGATGCTGGAAAAGCACCATCCGCTTGTAAAATTGTATTACTGTACTAGGACCTGCTCTTTACTATTTTGGTCTTAAAACATGTAATAGTCATCTGTATGCAGATGACACTTATGTATGCCATTGCAAACTGTTGACCAGGCTAGAGCTGCAATGTGATTTTGTTGCCTTATAGAAAGCCCTGGTTGGTTTAAAACTTGTACTTAATGTGGGCAAGACGAAATATGTGTTCTCTAATTCTAGCAAAAAAAATTCAGATGAACTACATATTTATTCATTGGATTGTTCTCCTATTGATCGGGTTCCTGCCTATAAATATCTGGGCATTCGGATTGACAAAGatctaatgtaaaaaaatatatatatacacttatGGGTGAGCTAATTAAAAAGCTGAGA

Function

NR:

description
SAYSvFN domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600957.2 True 1334 mRNA 0.42 2 33404409 33405969

Neighbor

gene id symbol gene type direction distance location
LOC110522512 LOC106568622 coding upstream 2254 33389872 ~ 33402155 (+)
LOC110522510 LOC106608180 coding upstream 23439 33358956 ~ 33380970 (+)
LOC110522508 ccr6 coding upstream 259240 33140884 ~ 33145169 (+)
LOC110522507 LOC106608145 coding upstream 266899 33119649 ~ 33137510 (+)
LOC110521081 LOC106571614 coding upstream 286347 32965207 ~ 33118062 (+)
LOC110522514 LOC106571629 coding downstream 3144 33409113 ~ 33411055 (+)
LOC110521085 LOC100380634 coding downstream 63560 33469529 ~ 33489784 (+)
LOC110522521 NA coding downstream 178976 33584945 ~ 33586386 (+)
LOC110522523 LOC106608181 coding downstream 227221 33633190 ~ 33636494 (+)
LOC110522524 LOC106608181 coding downstream 239259 33645228 ~ 33647432 (+)
G344572 NA non-coding upstream 18297 33385907 ~ 33386112 (+)
G344571 NA non-coding upstream 19187 33384905 ~ 33385222 (+)
G344570 NA non-coding upstream 19597 33384587 ~ 33384812 (+)
G344494 NA non-coding upstream 137092 33267077 ~ 33267317 (+)
G344491 NA non-coding upstream 140597 33263564 ~ 33263812 (+)
G344578 NA non-coding downstream 2523 33408492 ~ 33408895 (+)
G344582 NA non-coding downstream 8438 33414407 ~ 33414607 (+)
G344583 NA non-coding downstream 9626 33415595 ~ 33415963 (+)
G344585 NA non-coding downstream 12722 33418691 ~ 33418910 (+)
G344587 NA non-coding downstream 15175 33421144 ~ 33421376 (+)
G343958 NA other upstream 700038 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1618203 31785865 ~ 31786206 (+)
G342571 NA other upstream 1952933 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 1985153 31417955 ~ 31422086 (+)
G342538 NA other upstream 2021660 31381826 ~ 31382749 (+)
G344647 NA other downstream 146158 33552127 ~ 33554003 (+)
LOC110522536 LOC105024319 other downstream 985004 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 1131032 34536950 ~ 34541410 (+)

Expression


Co-expression Network