LOC110522514 (LOC106571629)


Basic Information

Item Value
gene id LOC110522514
gene name LOC106571629
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33409113 ~ 33411055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600959.2
caccctagcACCCTGGCTGTTGGTTTCCACTAGTTAAAATATCTTAATGGACTATACCgtaaaaataaataactaaaattagctttttggtcttaatttaaggttaggcataaggtggTTAAAGTTTAACTAGTGACGACCCTGAGTTATCGGTTGAGTCAAGTTTATTTCCCTGCGCTTTACGACACAACAGACGTCATTACTTACGCCCGAACCGGAAGTAAACAACCCGGGGTTAGTTATAAATACCTTTGCCGAAGTAGAACAACATATTTTAAGATCTGTTTTCTACGGATTTCTCACGTCACTCTTTGTGACAGTGAAACTTTGAATTCTATCAATGCATTGAAAGCACCTTATAATAACATTTCCGCTTTTGATTAGATCACCTTTCACACAATCGAGGGGTAATTTGCTAGAACAAAATGACGTCTCAAATCAGTCTAGCTAGCTAGTTCGCCAGCTATCAGTGCTTGATACCCGTCGTGCACAGTGCATACATTGTCAAGCAGTATCTCATTTCTGCATGAGTATGAATCAGAAGCTGTTAGCATTAGCAAAAGCTTGCAAAGTTCAGAGCCCCGTACAAGGGCTGGTGAGATGCAGCCCATAACATCACCTGGCAGTGGAAGCACTTTGAAGTCCGCCAGTTGGGAGTCAACAGCTGATAAAGACGCACAGGAGTTGACAAAACATCAGATGCCTGCTGTCCCTCAGGCTACAGGGACTTTACAGTGTGGGGATGACTGTCTGCTGGACTGCATTCTGGGTCGAAGGCTTGGTTCAAGGCAACTTGGTTTTGCAAACCGGACTTTGCTGAAGGTGTTGCTTTGGCTGGTTCTGCTTGGGCTGTTCGCTGAGCTGGCCTTCGGGTTGCCTTTCTTCCTAATCTCCCTCTTCTACTGGCTGTACCAGGGGCTGCGGAGCCCAGCTAAACGTCAACCTGGAGAACTGAGCGCTTACTCAGTATTTAACCCTGACTGTCAGCCTCTCATGGGCACCCTCACAGCAGAGCAGTTGGACTGTGAAATGGGAATACTTCAGCTAACCATGTAAAGGAATAGCTACAGATAATGTGATTTAAACCCCCCGAATTGGTATCCATTATACTGGGAGTTACAGGTTGGTACTGCACTGAATTTTCAACCAACCTTTGATGCTGCCTCCGGCCTCGATTCGTGGAAACGGGAGTCTCATAAAATGACCTTGTCTAGTTGCAGGGTGTCCGTTTGAATttctaaaatacttttttgctccatgaagtaatccaacaatgtgtacgccgccatcttgtctatttcaagtTCTCTCATTGACCAAGACCGGTGTCTGTCATGACATGCAGCACTTTGGGGTGGACAAACCCACCTGTCTCGATCAATGAGAGAAGacttgaaatagacaagatggcAACATACACATAGTTGGATTACTTCATggagcaaaaaaaaaatgtattttaataacGGTGCATTTTCTTAATTCAAAGGGACCCCCTGCAACTGgacaaggacattgagacttttcCACGAATCGAGGACGAAGATAGTATCGCCAAGCTAAATTCTGTGTTACACCAAACAGTACCTAACCTGGAACTCCCAGTATAATGGATACTACATTTTTTGGGTTAAATCACATTTTCTGGAGTTACAATATGTAGCTAGTTAAGGAACTTTTTGAAATGTGAACGAGTTGTGATTTTTCTGTTAATTATCTTATGATGCTTAGATGCCCCTCGACTCTTTCAATGAACGAAACACTAGTATTGGTTGTGATGTAAAACTGCTTGTTAATTCCATTAAAATTACTACATCTCACTA

Function

NR:

description
SAYSvFN domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600959.2 True 1823 mRNA 0.43 2 33409113 33411055

Neighbor

gene id symbol gene type direction distance location
LOC110522513 LOC106568623 coding upstream 3144 33404409 ~ 33405969 (+)
LOC110522512 LOC106568622 coding upstream 6958 33389872 ~ 33402155 (+)
LOC110522510 LOC106608180 coding upstream 28143 33358956 ~ 33380970 (+)
LOC110522508 ccr6 coding upstream 263944 33140884 ~ 33145169 (+)
LOC110522507 LOC106608145 coding upstream 271603 33119649 ~ 33137510 (+)
LOC110521085 LOC100380634 coding downstream 58474 33469529 ~ 33489784 (+)
LOC110522521 NA coding downstream 173890 33584945 ~ 33586386 (+)
LOC110522523 LOC106608181 coding downstream 222135 33633190 ~ 33636494 (+)
LOC110522524 LOC106608181 coding downstream 234173 33645228 ~ 33647432 (+)
LOC110522526 LOC106608180 coding downstream 243005 33654060 ~ 33656575 (+)
G344578 NA non-coding upstream 218 33408492 ~ 33408895 (+)
G344572 NA non-coding upstream 23001 33385907 ~ 33386112 (+)
G344571 NA non-coding upstream 23891 33384905 ~ 33385222 (+)
G344570 NA non-coding upstream 24301 33384587 ~ 33384812 (+)
G344494 NA non-coding upstream 141796 33267077 ~ 33267317 (+)
G344582 NA non-coding downstream 3352 33414407 ~ 33414607 (+)
G344583 NA non-coding downstream 4540 33415595 ~ 33415963 (+)
G344585 NA non-coding downstream 7636 33418691 ~ 33418910 (+)
G344587 NA non-coding downstream 10089 33421144 ~ 33421376 (+)
G344588 NA non-coding downstream 11248 33422303 ~ 33422613 (+)
G343958 NA other upstream 704742 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1622907 31785865 ~ 31786206 (+)
G342571 NA other upstream 1957637 31451133 ~ 31451476 (+)
LOC110522493 LOC106608104 other upstream 1989857 31417955 ~ 31422086 (+)
G342538 NA other upstream 2026364 31381826 ~ 31382749 (+)
G344647 NA other downstream 141072 33552127 ~ 33554003 (+)
LOC110522536 LOC105024319 other downstream 979918 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 1125946 34536950 ~ 34541410 (+)

Expression


Co-expression Network