LOC110522523 (LOC106608181)


Basic Information

Item Value
gene id LOC110522523
gene name LOC106608181
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33633190 ~ 33636494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600970.2
TGAAAAGGCATGATGACAGTTGTGACACACCTCGTCACAAGTCTGGTCGAAATCTAGTGCATGGAAATACATGGATGGCAAACCCTAACACTAACAAGAGGCCTCTAAATGGACAAACATGTCATCAACAACTTCCAACCGAACACATCATCTAACTCTGATAGCTGCTCTTGGGGTTTTGTGTTCAGTGGTACTATTTTTTGTTTACTTTCAACCAACATCTACTGTATGTCCATCTCGATTAGATGATTTGCCATTTTTGGCAAAGGGAGATGTTTCCTCACCTACCAAAAAGCCTGTGGAAAAGCCGTTTGTGTTGCTCTGGTTCTGGCCACTGGGTGTGAGATGGAATTTTGAAATCTGCAAAACCCACTTCAACATCGATAGCTGTGTTCTGACAGATGACAGATCCCTTTATGACAAAGCAGAGGGAGTGGTTGTTTTTCACAAAGGCATCAGCTGGGACCTGAAGAACCTGCCTCAGTCTCCTCGTCCACATTTTCAGAAATGGATctggtttcatgtggaatcacCAACAAATACCGCCAGAATACCAGGTCTGGAAAATCTATTTAACCTCACTTTGAGCTATAGACGAGATGCTGACATCACAGTGCGAAATGAATTGACAACCGTGAAGAATGAAAAGGACAGTGAGTTTTTGCTGCCCAGGAAGGATAAATTGGTTTGTTGGATTGTGAGCAACAACAATCCTTCAACTGGGACAGGAACCAGAGCAAAGTATTATCAAGAGTTGGTCAAACACATCAAGATACATGTTTATGGTTCTGCTTTTACAGGGAGTCGTTTGAAGTATGAGGAGTATTACTCAACCCTTGCTAGCTGTAAATTCTACCTTTCATTTGAGAATTCAATCCACAGAGACTACATCACAGAAAAGGTGAACGGACCACTTGTAGCAGGAACCATACCAGTAGTCATGGGCCCACCCAGAGAGAACTATGAACAGTTTATCCCAGCTGGTTCTTTCATTCATGTAAATGACTTTACTAATGCAAAGGCGCTGGCTGACTTCCTCCTCCAATTGGACAAGAATGATGAGATGTATATAAGTTACTTCACTTGGAGGAGGTACCTTAATGCCAAACCCCACCTCCTGACAATACAGGAAGAGTTCATTCAACCTGTTTGTTTAGCCTGTGAATACATGGCAAGAGACAAAGGATATTACAATGCTGTCCACAACCTTTATGAATGGTACTTTGGATGAGGGTTTAGCCATCATTTTGTAAGCACAGAAAATAACATTTTACCTTAGCTACATAAACGGAATACAATTTTAAAAGTGTCTTTGGATTTGGAGATATTTTGATTCAAAATCTTTATCAATTTAAAGGATGTGCATTCAAGGTTTTGGGGaagattaaaataaataaataattaaacgcTTTGGAAGCAACATACACTGTAAACCCTAATGTGCTGTCATTACTCAAAACTTTTAAGGAACCCATTGCACTTAAAtaaaaccttttactgcagtgggctaaatcagctGGTCAGAGTTATTCTTCGTGGTCCTTAACAAATCTACTGTGAAACCAAAGTATACACCTCCCACACATGGTTATAGGCTTAAAAAAATTAGAAACctttaccatgtcagatatagagttcaaatgtattacattttcacTTTGAATGTCAATATTACattttatatacatcacagaagaccgAACTATAACAAAACGGTTTgatatagaaacaccagattttagtctgttaaaaaaaaaatatatatttattatttatgaaaaattataacattccacccatgaggtcaACGACGGCGCTTTTGGTAATTGATTGCAGGAAAGGGTTGCTATGTCTGGATACAATTACTTAAAGTGATTTTGTAGTCATTACTCACACTGACCCTatagggcaggggtgtcaaactcattccagggAAGTCCACGTTTTGGGGTTTTcctttcaatgacgacctagacacccaggtgagaggagttccttactaattagtgaccttaattcatcaatcaagtgcAAGGGTGGAGCGGAAACCCACAGATACTCTGCCCTCCATGGAATTAGTTTGACACGTGTTGTAGAGGGTCCAGATTTGAGTTGTATAATTTTATTGCCGTTTGTATGACATTTGAATAATGCCTCCAATATAATTTCCCAGTGTGCCTAGTCTTTGAATGAATTGCAGAGTTACTGTACTGGTTGTTGAATTCACTCATTTTTAGTTGTGTGGGTGGCCTTCACTGAGTGAGTTCCTAGGCAAATGTTGTCTTTATAGTTCAACACTTAATGACAAAACATTACATATCCAGTAAGGACTTATTTGAGGCCTCGTGAAATTCCAGTATCTTTACCACATTTTCAAAAAATCCTGGTTGAAGAATTTCCTGGATTCTTCCAACTGGGATTCCTGAAAAACCTGGGAAATTTACCATCATTTTGCAACCCcacctgcaagtcacattatgctggcttgcaaagtgacgTATAactcctattggaatccagacagAGTTAGGATATCTATTAACCATGGAAATTGGAACACCCATTTCCGTAATGAGTGCAAAAAATCTAAGGATTCATTTagaaaaatgcatgttttttatGTGTAGCATAAATGTGTCCATCAATCACTCAACGTACATGCAAAAACACTTGTTTTAGTTTTGAGTTTGTGCTTcataaacattttaataaataaatgacttTTCATT

Function

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600970.2 True 2729 mRNA 0.38 2 33633190 33636494

Neighbor

gene id symbol gene type direction distance location
LOC110522521 NA coding upstream 46804 33584945 ~ 33586386 (+)
LOC110521085 LOC100380634 coding upstream 157419 33469529 ~ 33489784 (+)
LOC110522514 LOC106571629 coding upstream 222135 33409113 ~ 33411055 (+)
LOC110522513 LOC106568623 coding upstream 227221 33404409 ~ 33405969 (+)
LOC110522512 LOC106568622 coding upstream 231035 33389872 ~ 33402155 (+)
LOC110522524 LOC106608181 coding downstream 8734 33645228 ~ 33647432 (+)
LOC110522526 LOC106608180 coding downstream 17566 33654060 ~ 33656575 (+)
LOC110522527 LOC106608180 coding downstream 32678 33669172 ~ 33673911 (+)
LOC110522531 LOC106608192 coding downstream 493354 34129848 ~ 34133896 (+)
LOC110522532 LOC106608175 coding downstream 531756 34168250 ~ 34200246 (+)
G344692 NA non-coding upstream 3179 33629669 ~ 33630011 (+)
G344685 NA non-coding upstream 14950 33617941 ~ 33618240 (+)
G344679 LOC100194703 non-coding upstream 21367 33611516 ~ 33611823 (+)
G344673 NA non-coding upstream 32593 33600073 ~ 33600597 (+)
G344670 NA non-coding upstream 37181 33593278 ~ 33596009 (+)
G344740 LOC106608176 non-coding downstream 111646 33748140 ~ 33752828 (+)
G344741 NA non-coding downstream 117400 33753894 ~ 33754145 (+)
G344743 NA non-coding downstream 119443 33755937 ~ 33756163 (+)
G344750 LOC106608176 non-coding downstream 127539 33764033 ~ 33764286 (+)
G344751 NA non-coding downstream 141052 33777546 ~ 33777773 (+)
G344647 NA other upstream 79187 33552127 ~ 33554003 (+)
G343958 NA other upstream 928819 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1846984 31785865 ~ 31786206 (+)
LOC110522536 LOC105024319 other downstream 754479 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 900507 34536950 ~ 34541410 (+)
LOC110522546 LOC106608201 other downstream 1183948 34807607 ~ 34831281 (+)
G346334 NA other downstream 1437445 35073939 ~ 35074338 (+)
G347151 NA other downstream 2196875 35833369 ~ 35833844 (+)

Expression


Co-expression Network