LOC110522524 (LOC106608181)


Basic Information

Item Value
gene id LOC110522524
gene name LOC106608181
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33645228 ~ 33647432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600971.2
GGATCAACCTCTAGTTGTCAGGCAGGTTCTTTTGCATTTCCCATGAAAAGGCATGATGACAGTTGTGCCACACCTCGTCACTAGTCTGGTTGAAATCTAGTGCATGGATTTACATGGATGGCAAACCCTAACACTAACAAGAGGCCTCTAAATGGACAAACATGTCATCAACAACTTCCAACCGAACACATCATCTAACTCTGATAGCTGCTCTTGGGGTTTTGTGTTCAGTGGTACTATTTTTTGTTTACTTTCAACCAACATCTACTGCATGTTCATCTCGATTAGATGATTTGCCATTTTTGGCAAAGGGAGATGTTTCCTCACCTACCAAAAAGCCTGTGGAAAAGCCGTTTGTGTTGCTCTGGTTCTGGCCACTGGGTGTGAGATGGAATTTTGAAATCTGCAAAACCCATTTCAACATCGATAGCTGTGTTCTGACAGATGACAGATCCCTTTATGACAAAGCAGAGGGAGTGGTTGTTTTTCACAGAGACATCAGCTGGGACCTGAAGAACCTGCCTCAGTCTCCTCGTCCACATTTTCAGAAATGGATctggtttcatgtggaatcacCAACAAATACCGCCAGAATACCAGGTCTGGAAAATCTATTTAACCTCACTTTGAGCTATAGACGAGATGCTGACATCACAGTGCGAAATGAATTGACAACCGTGAAGACTGAAAAGGACAGTGAGTTTTTGCTGCCCAAGAAGGATAAATTGGTTTGTTGGATTGTGAGCAACAACAATCCTGCAACTGGGACAGGAACCAGAGCAAAGTACTATCAAGAGTTGGTCAAACACATCAAGATACATGCTTATGGTTCTGCTTTTACAGGGAGTCGTTTGAAGTATGAGGAGTATTACTCAACCCTTGCTAGCTGTAAATTCTACCTTGCATTTGAGAATTCCATCCACAGAGACTACATCACAGAAAAGGTGAACGGACCACTTGTAGCAGGAACCATACCAGTAGTCATGGGCCCACCCAGAGAGAACTATGAACAGTTTATCCCAGCTGGTTCTTTCATTCATGTAAATGACTTTACTAATGCAAAGGCGCTGGCTGAATTCCTCCTCCAATTGGACAAGAATGATGAGATGTATATAAGTTACTTCACTTGGAGGAGGTACCTTAATGCCAAACCCCACCTCCTGACAATGCAGGAAGAGTTCATTCAACCTGTTTGTTTAGCCTGTGAACACATGGCCAGAGACAAAGGATATTACAATGTTGTCCACAACCTTTATGAATGGTACTTTGGATGAGTGTTTAGCCACCATTTTGTAAGCACAGAAAATATAATTTTAGCTTAGCTACATAAACGGAATACAATTTTAAAAGTGTACTCGAATTTGGGGATATTTTGATTCAAAATATGTGTATCATTTCAAAGGATGGGCATTCAAAGTTTTGGGGAAgattctattttattttttattaaacactTTGGAAGCAGAATAAACCCAAATGTGCTGTCATTATTCAAAACCTTTAAGGAACCCATTGCACTTGACCTTTTACTACAGTTGGCTAAATCAGCTGATCAGACAGctattcttggtagtcttaaacaaatctactttaaaaccaaactacagtgccttgcgaaagtattcggcccccttgaactttgcaaccttttgccaca

Function

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600971.2 True 1657 mRNA 0.41 2 33645228 33647432

Neighbor

gene id symbol gene type direction distance location
LOC110522523 LOC106608181 coding upstream 8734 33633190 ~ 33636494 (+)
LOC110522521 NA coding upstream 58842 33584945 ~ 33586386 (+)
LOC110521085 LOC100380634 coding upstream 169457 33469529 ~ 33489784 (+)
LOC110522514 LOC106571629 coding upstream 234173 33409113 ~ 33411055 (+)
LOC110522513 LOC106568623 coding upstream 239259 33404409 ~ 33405969 (+)
LOC110522526 LOC106608180 coding downstream 6628 33654060 ~ 33656575 (+)
LOC110522527 LOC106608180 coding downstream 21740 33669172 ~ 33673911 (+)
LOC110522531 LOC106608192 coding downstream 482416 34129848 ~ 34133896 (+)
LOC110522532 LOC106608175 coding downstream 520818 34168250 ~ 34200246 (+)
LOC110520988 LOC106571729 coding downstream 579021 34226453 ~ 34229272 (+)
G344692 NA non-coding upstream 15217 33629669 ~ 33630011 (+)
G344685 NA non-coding upstream 26988 33617941 ~ 33618240 (+)
G344679 LOC100194703 non-coding upstream 33405 33611516 ~ 33611823 (+)
G344673 NA non-coding upstream 44631 33600073 ~ 33600597 (+)
G344670 NA non-coding upstream 49219 33593278 ~ 33596009 (+)
G344740 LOC106608176 non-coding downstream 100708 33748140 ~ 33752828 (+)
G344741 NA non-coding downstream 106462 33753894 ~ 33754145 (+)
G344743 NA non-coding downstream 108505 33755937 ~ 33756163 (+)
G344750 LOC106608176 non-coding downstream 116601 33764033 ~ 33764286 (+)
G344751 NA non-coding downstream 130114 33777546 ~ 33777773 (+)
G344647 NA other upstream 91225 33552127 ~ 33554003 (+)
G343958 NA other upstream 940857 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1859022 31785865 ~ 31786206 (+)
LOC110522536 LOC105024319 other downstream 743541 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 889569 34536950 ~ 34541410 (+)
LOC110522546 LOC106608201 other downstream 1173010 34807607 ~ 34831281 (+)
G346334 NA other downstream 1426507 35073939 ~ 35074338 (+)
G347151 NA other downstream 2185937 35833369 ~ 35833844 (+)

Expression


Co-expression Network