LOC110522526 (LOC106608180)


Basic Information

Item Value
gene id LOC110522526
gene name LOC106608180
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33654060 ~ 33656575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600972.2
CTGCTTTGCCACTCCTGAAACATTGAGGATGTTTTCTGCCGCTGTCGGATGTCTCACTGTTTCATGTTTATATACTTGAACAGATGAGTATGTGACTGAGAAACAAATCACACAGTTCAACATTTCTGACTGGGTGTGTGTAGGAATTACAAAACCGATCACAGAGCAGATCACCGAACATCTCTGAACAAGCTGTAACAAGAACAACCTGTTGTCTGAATGCCCAAAATGGTTTCTGGAGTTGTACGCGTTGTCCTGTTCTCGATCCTTGGTATAGGAGGATTTCTGACGCTGTTTGTAATGTACTATCAATCAGCTCCATCTCAGATCTGCCCTCCCCAACCTGCTTTGCCACGTCATTACTCAAAGTCACCTGAGAACAGCTCATTGTCTAAGAAGCAGCCAGAGCCAGACAAGCCCATCATGCTGTTGTGGTTCTGGCCAGAAAACCGCAGGTTTGATTTTAGAGATTGCACCACTTTCTTCAACATTGATGGCTGCCAACTGACAGATGACCGGTCTCTGTACAACAAGGCAGATGGGGTGCTCATCTTTCACAAATCCATCAAACATGATTTATCCAACTTGCCTCCATCACCTCGACCACCATTCCAGAAGTGGATCTGGTATCATGTGGAATCACCTACAAACACAATTAGAATACCTGGTCTAGAGAACCTTTTCAACTTGACCTTGAGTTATAGGGAAGATGCAGACATCCCTGTACGTTGGCGCTTAACTGCAAGGAAAGGCCAGGGTGAGGACTTTGTGCTGCCCAAGAAGGATAAATTAGTTTGCTGGATTGTGAGTAACAATAACCCTGCAACTGGAACAGCAGTAAGGGATAACTATTACAGAGAACTTGTCAAACATATTAAGGTGGATGTCTATGGAAAAGCCTTTGCAAGATTCTTGAGATATGAGGACTACTTCTCAACACTCTCCAGCTGTAAGTTCTACCTCTCCTTTGAGAACTCAGTCCACAAAGACTACATCACTGAGAAGCTTAACGGACCACTTGTAGCAGGAACTGTGCCAGTAGTATTGGGCCCACCGAGACAGAACTATGAGGACTTTGTCCCGGGAGATTCCTTCATCCATGTTAATGATTTTCCCAATGCAAAAGCCCTGGCTGAATTCCTCCTGAAGTTGGACAAGGATGATGAGGCATATCTGCGCTACTTTCAGTGGCGTAGAAACTTATTTGCTCAGCAACATCTAATTCAACTGAGTCAAGAGTTCATCCAATCTATTTGTTATGCCTGTGACCATATAGGCAAACATAAGGAGTACAGGGTTGTTCCTGATCTTTACAAATGGTATTTGGTTTAATTAGTCTCCTCTGATTAGCTATTACCATCACTGGTGTAGTCCCCCCTCCCCAGATATGAAAATGAACAGGTTATGAACCATGACTAAAATgtttagaattacaggaaattagctgtaaaactgcaaagTTTTCGCACAGCCTTATGGCAAAGTGTGTAGAATATCACAAAATGTGCTTAAAAATGTACAATTCTCTCAAAATGTAAAATTCTCTAGCATGAGATCACCTATTAAACTTCACATGTTTTTGCGATACTGCGGTAG

Function

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600972.2 True 1596 mRNA 0.43 2 33654060 33656575

Neighbor

gene id symbol gene type direction distance location
LOC110522524 LOC106608181 coding upstream 6628 33645228 ~ 33647432 (+)
LOC110522523 LOC106608181 coding upstream 17566 33633190 ~ 33636494 (+)
LOC110522521 NA coding upstream 67674 33584945 ~ 33586386 (+)
LOC110521085 LOC100380634 coding upstream 178289 33469529 ~ 33489784 (+)
LOC110522514 LOC106571629 coding upstream 243005 33409113 ~ 33411055 (+)
LOC110522527 LOC106608180 coding downstream 12597 33669172 ~ 33673911 (+)
LOC110522531 LOC106608192 coding downstream 473273 34129848 ~ 34133896 (+)
LOC110522532 LOC106608175 coding downstream 511675 34168250 ~ 34200246 (+)
LOC110520988 LOC106571729 coding downstream 569878 34226453 ~ 34229272 (+)
LOC110522534 LOC106608173 coding downstream 661938 34318513 ~ 34338873 (+)
G344692 NA non-coding upstream 24049 33629669 ~ 33630011 (+)
G344685 NA non-coding upstream 35820 33617941 ~ 33618240 (+)
G344679 LOC100194703 non-coding upstream 42237 33611516 ~ 33611823 (+)
G344673 NA non-coding upstream 53463 33600073 ~ 33600597 (+)
G344670 NA non-coding upstream 58051 33593278 ~ 33596009 (+)
G344740 LOC106608176 non-coding downstream 91565 33748140 ~ 33752828 (+)
G344741 NA non-coding downstream 97319 33753894 ~ 33754145 (+)
G344743 NA non-coding downstream 99362 33755937 ~ 33756163 (+)
G344750 LOC106608176 non-coding downstream 107458 33764033 ~ 33764286 (+)
G344751 NA non-coding downstream 120971 33777546 ~ 33777773 (+)
G344647 NA other upstream 100057 33552127 ~ 33554003 (+)
G343958 NA other upstream 949689 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1867854 31785865 ~ 31786206 (+)
LOC110522536 LOC105024319 other downstream 734398 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 880426 34536950 ~ 34541410 (+)
LOC110522546 LOC106608201 other downstream 1163867 34807607 ~ 34831281 (+)
G346334 NA other downstream 1417364 35073939 ~ 35074338 (+)
G347151 NA other downstream 2176794 35833369 ~ 35833844 (+)

Expression


Co-expression Network