LOC110522527 (LOC106608180)


Basic Information

Item Value
gene id LOC110522527
gene name LOC106608180
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33669172 ~ 33673911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600973.2
TTTTCCCCTGAAGCGTATTTCTGCCGCTGTCTGATGCTTCTTCCTTTTCAAATGTAAACAATAGGTGTATATTTTGAAGATAATTTGAAACAGCGTCTCACTGTTTCACGTTTATATACTTGAACAGATGAGTATGTGACTGAGAAACAAATCACACAGTTCAACATTTCTGACTGGGTGTGTGTAGGAATTACAAAACCGATCACAGAGCAGATCACTGAACATCTCTGAACAAGAACAACCTGTTGACTCAATGCCCAAAATGGTTTCTGGAGTTGTACGCGTTGTCCTTTTCTCGATCCTTGGTATAGGAGGATTTCTGACGCTGTTTGTAATGTACTATCAATCAACTCCATCTCAGATCTGCCCTCCCCAACCTGCTTTGCCACGTCATTACTCAAAGCCACCTGAGAACAGCTCCTTGTCTAAGAAGCAGCCAGAGCCAGACAAGCCCATCATGCTGTTGTGGTTCTGGCCTGAAAACCGCAGGTTTGATTTTAGAGATTGCACCACTTTCTTCAACATTGATGGCTGCCAACTGACAGATGACCGGTCTCTGTACAACAAGGCAGATGGGGTGCTCATCTTTCACAAATCCATCAAACATGATTTATCCAACTTGCCTCCATCACCTCGACCACCATTCCAGAAGTGGATCTGGTATCATGTGGAATCACCTACAAACACAATTAGAATACCTGGTCTAGAGAACCTTTTCAACTTGACCTTGAGTTATAGGGAAGATGCAGACATCCCTGTACGTTGGCGCTTAACTGCAAGGAAAGGCCAGGGTGAGGACTTTGTGCTGCCCAAGAAGGATAAATTAGTTTGCTGGATTGTGAGTAACAATAACCCTGCAACTGGAACAGCAGTAAGGGATAACTATTACAGAGAACTTGTCAAACATATTAAGGTGGATGTCTTTGGAAAAGCCTTTGCAAGATTCTTGAGATATGAGGACTACTACTCAACACTCTCCAGCTGTAAGTTCTACCTCTCCTTTGAGAACTCAGTCCACAGAGACTACATCACTGAGAAGCTTAACGGACCACTTGCAGCAGGAACTGTGCCAGTAGTTTTGGGCCCACCGAGACAGAACTATGAGGACTTTGTCCCGGGAGATTCCTTCATCCATGTTAATGACTTTCCCAATGCAAAAGCCCTGGCTGAATTCCTCCTGAAGTTGGACAAGGATGATGAGGCATATCTGCGCTACTTTCAGTGGCGTAGAAACTTATTTGCTCAGCAACATCTAATTCAACTGAGTCAAGAGTTCATCCAATCTATTTGTTATGCCTGTGACCATATAGGCAAACATAAGGAGTACAGGGTTGTTCACGATCTTTACAAATGGTATTTGGTTTAATTAGTCCCTTCTGATGAGCTATTACCATCACTGgtgtagtcccccccccccccagatatgAATATGAACAGGTCATAAACCATGACTAACAATgtttagaattacaggaaattagctgtaaaactgcaaagTTCTCACTCAGCCTTATGGCAAAGTGTGTAAAAAAGCACAAAATGTGCTTGAAAAATGTACAATTCTCTAGCACGAGATCACCTATTAAACTTCACATGTTTTTGAGAAACTGCGGTAGGCCACTGATTATCATCATATTGTCTGTATGCTCTTTTTCTTGAGGAAATCTATTTGTGGattgtactactctgctgtacaGACCCAAGTGCATTCAGCCTCATTGCGATACATTGAGTTTCGTTGTAGGTCTATTTAGCGGGGAAACAGTGAATCCAGCTGTAGCCTATTGCCTGTTTCTGTTCATTAGTCTTTTTTTAAGTAAATTGAAAACAAAGCTGTCTATTTCTTGCTTTTCATTCAATCGTATGGCTGTTACTTAGGCTTTGGTCTAAAATAAATTCGTTTAGAAGGGCAGATTTGAAGGCTTCTATGTTGTATTACAGGCTAACGAGTTTGTGAAAATAAACCGTTCCTATGGAAATATTCGGACCTGGCAAAAGGCCAACATTTTTTTcgtttcaaataaaaaatatatactcacATGATAATAGAAATGGAAACATTGTGATTTTATAGACACAAATTATGAAAGCGATGGAGTCCGTCGGTTACTACGCTCTCACCATCATCAATATCATTATTTACACTTTTGAAATTcaccatttttttaaatttataaaTACACAAATGAAAACATTGCGGTATGTGTAAAGAGACAGTAAAATATTATATTTCTCAGACGTCATACATGTGTCAAATCATTCCTGCACCAACATTGTTAGAGATGGATGTGATTGGTACATCTCTTCCTCTTCAAATGCATTATGTGTGTAGGTTTGAGTGAGAGGCAAGAGGGAAAATAGAGAAGGGAGGTAGGTGTCTGATGAATCAGGAATCAAGGGTTTTgcaccaaatatcaacatttaaagagGTTTATATTCTGCTTGTATAGTTGCATCTGTGCCTcggacttagtctggctttaaatGTCTTCAAATTAACatttgatatgttggattcacgacTACATCTCAACGAAAAATGAAAGACTAGGGATAAATCAAATATACTTTATTTCAAGTTGGATTTGATTTAGTTATATTATTGAACTTGATTTTCCTCTTCAATTGTTtatatttggttgcattgacaaCCAATCACAATTCAATATAATTTTTGAAATAcataaatagcctattaacttgaCCATGTGTTGGATTAACGTCTCCAATTgaaccaaaaataaaagttaaagaatgggattaagccagtggctcagatggatctatccaagcagtagatactgtacatctcctttaaaatgttgatttttgTTTACGTTGTCAAGTAAACAAAATGCTatattacttttgtaatccagtaaatagcctaaagttaaggctgttttacaaactaatgtaacattcaACCTTACAGTGAGGAAGACATCCATAGTCACATTGAGGTTTCCCGGAACTATACATTATAGAGTAATAACGCATACATCTGTTTTATAAATCAACACATTATCTGGCATTGTTTTTCCATTTAAACTTTTAAATGgttgtctttttgagtgggtgaataaatcttgtaatctcattgatcaacatcactctcaaccaaatattacccaattatccaggtggaaatgacgtggtgtgcccagtgagTAGAACCTGAAAGCATTGTGGATTTGTTTGCTAATCCTGCTCTTCATAGTTCAGTGAAAATGCCAATGTTTACAAATAACTTTCCTGACCTCATTCGACATGTAAACAAAGAGTTCCTGGTTTATATTATATTGTACGCTAATTAGTAATGAGTACCGATATATAAAATCGACTGTATATCGATATTAGTTCAATTTTTTCGATGGACCTAAAATGAGTAAAATGAGGCTCTATATCGTGTTATAAAATATGCGAATGCGTGAATGTTCCCTTTTCTGATAACTTCCATGTCTCCTTAAAGTCGAGACAGCTATGATTATCCATCATCTCTCTATGTGTAGGGTACAATATGCAGCTTCAGCATATGGCGCGTGGAGAGAGGAattattctttattttattttgtattttattattggctgttgcgaaagcagcagctactcttcctggggtccacacaaaacacaaaacatgacagaACTTTAATAGACAAGGTcagctcaaggacagaaatacatacatttaaaaacggaACTCATAGCCTTCACATTGTTTTACAATTTAATCTCCCGATCACAACTGGTCGCTATCAAAGTCCaaatagggcggcacacaattggcccagcgtcgtccgggttaggggagggtttggccgggtaggTAAATTGTAAAAtattaatttgttcttaacg

Function

NR:

description
alpha-(1,3)-fucosyltransferase 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600973.2 True 3862 mRNA 0.38 2 33669172 33673911

Neighbor

gene id symbol gene type direction distance location
LOC110522526 LOC106608180 coding upstream 12597 33654060 ~ 33656575 (+)
LOC110522524 LOC106608181 coding upstream 21740 33645228 ~ 33647432 (+)
LOC110522523 LOC106608181 coding upstream 32678 33633190 ~ 33636494 (+)
LOC110522521 NA coding upstream 82786 33584945 ~ 33586386 (+)
LOC110521085 LOC100380634 coding upstream 193401 33469529 ~ 33489784 (+)
LOC110522531 LOC106608192 coding downstream 455937 34129848 ~ 34133896 (+)
LOC110522532 LOC106608175 coding downstream 494339 34168250 ~ 34200246 (+)
LOC110520988 LOC106571729 coding downstream 552542 34226453 ~ 34229272 (+)
LOC110522534 LOC106608173 coding downstream 644602 34318513 ~ 34338873 (+)
LOC110522535 LOC106608172 coding downstream 683179 34357090 ~ 34364255 (+)
G344692 NA non-coding upstream 39161 33629669 ~ 33630011 (+)
G344685 NA non-coding upstream 50932 33617941 ~ 33618240 (+)
G344679 LOC100194703 non-coding upstream 57349 33611516 ~ 33611823 (+)
G344673 NA non-coding upstream 68575 33600073 ~ 33600597 (+)
G344670 NA non-coding upstream 73163 33593278 ~ 33596009 (+)
G344740 LOC106608176 non-coding downstream 74229 33748140 ~ 33752828 (+)
G344741 NA non-coding downstream 79983 33753894 ~ 33754145 (+)
G344743 NA non-coding downstream 82026 33755937 ~ 33756163 (+)
G344750 LOC106608176 non-coding downstream 90122 33764033 ~ 33764286 (+)
G344751 NA non-coding downstream 103635 33777546 ~ 33777773 (+)
G344647 NA other upstream 115169 33552127 ~ 33554003 (+)
G343958 NA other upstream 964801 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 1882966 31785865 ~ 31786206 (+)
LOC110522536 LOC105024319 other downstream 717062 34390869 ~ 34394175 (+)
LOC110522530 LOC106608164 other downstream 863090 34536950 ~ 34541410 (+)
LOC110522546 LOC106608201 other downstream 1146531 34807607 ~ 34831281 (+)
G346334 NA other downstream 1400028 35073939 ~ 35074338 (+)
G347151 NA other downstream 2159458 35833369 ~ 35833844 (+)

Expression


Co-expression Network