LOC110522534 (LOC106608173)


Basic Information

Item Value
gene id LOC110522534
gene name LOC106608173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34318513 ~ 34338873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976143.1
CTCCCTCTTTCCGGGTTCCGTCATCACCTTCTCCCGCTGATCAGTGGAGCCAGTCTATCCTATAAGCGCGCTCACGGCCAACCTGCTAACATTCGCTGACACCCTCACGTTTCAGAGCCGGAGGAAATGGCCACGAGGACCGACGCATCGATATAGTCTTTCTTATTAGATTTCATTCAAAAGCTGTGCGTTGGAGGAATAGATTGCCTTCTGGAACTAATAATCTCTGTACACCGTATTTAGATTACCTTGACAACCGGTCTCAGTGATTGACAGCAGGACCGATACATGCGAGTTGTTGATGCGCTTAAAAAACTTTTATGAACCGAAGGTTCTACTTGGTCTTACCCGTTATGGTGATTTTTCCATTTCGGCTAttgcaatattttttttcttgttGAAAAATACACATCTTCACCTTGCTGCGGGTTTCTTCTTTATTGCCACTGCGGATTACAATTCTCAACTGGATGTAAAAGGCATTAACTTGATACACCACCTTCTCTGCGAACTGACTTATTCcctgtgttttacctttttatctCCAAGACAGGCGCATGTCGATGGCGCAAAGGTACGATGAGCTGTCCCACTATGGTGTTGGGATGGACGGAGTTGGACTCCCGGCGTCCATGTATGGAGACCCCCATGCTCCCCGGACGCTTCCGCAAGTCCACCACTTGAACCATGGTCCGACTGCACATCCAACCCAGCACTATGGATCCCACGCACCCCACAACATCATGCCCAGCATGGGCAGCGTGGTGAACGACGCCTTAAAAAGAGACAAAGATCAAATCTATGGTCACCCGTTGTTCCCTCTGCTCGCCTTGGTGTTTGAGAAGTGTGAGTTGGCGACCTGCACGCCCAGGGAGCCTGGAGTAGCGGGTGGCGATGTCTGCTCCTCAGACTCCTTCAACGAAGACATCGCTGTCTTTGCAAAACAGATACGGGCAGAAAAACCGTTATTTTCATCGAATCAAGAGGTGGACAATTTGATGATCCAAGCTATTCAAGTATTGCGGTTTCATCTTTTAGAATTAGAGAAGGTACATGAGCTCTGCGACAACTTCTGCCATCGGTACATCAGTTGTTTGAAAGGCAAAATGCCCATCGACTTGGTCATAGACGATCGAGATGGCTGCAAATCTGACTTAGATGACCTGACGGGATCCTCCACAAATCTAGCAGATCACAACCCAGCGTCCTGGAGAGACCTGGATGACGCCCACTCCACGCCCTCCGTGGGCACCCCGGGGCCCTCCAGCGGGGGCCACATCTCCCAGAGTGGGGACAACAGCAGCGAACTCGGAGATGGCCTCGACAACAGTTTGGCGTCGCCGGGTACAGGAGACGAGGATGACCTGGACaagaagagacagaagaagagaggtaTCTTCCCCAAAGTGGCCACCAATATAATGCGAGCGTGGCTCTTCCAGCACCTCACGCACCCCTACCCTTCGGAGGAACAGAAGAAGCAGCTAGCACAGGACACAGGCCTCACCATCCTGCAAGTGAACAACTGgtTCATCAACGCCAGGAGGAGAATAGTACAGCCTATGATTGACCAGTCTAACAGATCAGTGGGCCAGGGGACGGCATACAGCCCTGACGGGCAACCAATGGGAGGCTTTGTCCTCGACGGACAGCAACACCTGGGGATTCGGCCTGGCGGACCAATGGGTGGAATGGGAATGAATATGGGGATGGATGGTCAGTGGCACTACATGTAAACCCTGTCCAACCGAGGCAAGcctgaagaagaagatggagaaGCCTCCATGGTTTGCTCAGGGAAAATCCTGCCGCTTGGTTCCAATGAGCGTGTGACTCCGCCCCAGTCACACCTGTACCTGTCATCTGACGACGCCCACCTCACCTCCCCACTGGAGCATGGAGGACCACACCCACATCTGCACAAACGCCGCCCACATTGACCTTTAATAACCCCACGCCTGGAGGAAGACGAGGATCTactaataaacaacaacaaaaacaacaacatttgcaGACAACAATCTTCCAAAACAAAAAAAGACTTCTGTATGAACAACGGAAGCTAAAAGGACCTCAAACAcattttgacacattttttgttttcttttttaaattatttatttatttttctacaATGGTGGACCACAGGGACAAGAACTTTTTAGTCTTTGCCCGAGATATTTTGACACagccggcacacacacacactaacacacattccctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcaaacaaatacacacacttcATCTTATGAACACACCATTTGAAAACAACCACTGTGGAATATCTAAAAGGAGTATGAAGAGTTTTACTAACTGTTGTGGTGTATAGACTTGTGCTTTTACATTTGACTGTTTTCTCCATGTTTGCGCTTTGTGATCATTAGTTTATGGAGTGAGAGTTTATCACTAATCCTGTGTGCTgtggaacagagagaaagagagaaagagagagattgccTCGGAGTCTGCAGCCTGGAGCTTGTCTCAGATACTGCAGACGGCAGCCCCATCCAGCTCCCAACAAAAAAACAAGCCCTCTTTTTATTTGTATTCTGAATGTGGCCCAGTTGCTTTTATTACCCATGCACTGAATGCATTTCATATATTTGTTATTATTCTGTTTTGATTTGGATTGTTCTGTGTTGTCCTGAATTCAGACTAAAGAGCTGATGGATTGACGTCACACTGGTAAGGTGGATCTTGGACCGACTTCCATTTAGATCATGTCACAATAGTTTTATAGCACACAGGAAGAAGGAAAGGGTTTCTGCACTAAAGaccaaaataaaaaacaattttAAAACTTGA

Function

NR:

description
PREDICTED: homeobox protein Meis2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16672 HTH; homeobox protein homothorax

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976143.1 True 2908 mRNA 0.48 13 34318513 34338873

Neighbor

gene id symbol gene type direction distance location
LOC110520988 LOC106571729 coding upstream 89241 34226453 ~ 34229272 (+)
LOC110522532 LOC106608175 coding upstream 119461 34168250 ~ 34200246 (+)
LOC110522531 LOC106608192 coding upstream 184617 34129848 ~ 34133896 (+)
LOC110522527 LOC106608180 coding upstream 644602 33669172 ~ 33673911 (+)
LOC110522526 LOC106608180 coding upstream 661938 33654060 ~ 33656575 (+)
LOC110522535 LOC106608172 coding downstream 18217 34357090 ~ 34364255 (+)
LOC110522536 LOC105024319 coding downstream 51996 34390869 ~ 34394175 (+)
LOC110522537 LOC106608171 coding downstream 55447 34394320 ~ 34397704 (+)
LOC110522540 LOC106608169 coding downstream 116319 34455192 ~ 34459207 (+)
LOC110522530 LOC106608164 coding downstream 198077 34536950 ~ 34541410 (+)
G345634 NA non-coding upstream 11987 34300560 ~ 34306526 (+)
G345627 NA non-coding upstream 28725 34285276 ~ 34289788 (+)
G345626 NA non-coding upstream 30967 34282716 ~ 34287546 (+)
G345610 LOC106608174 non-coding upstream 61320 34255013 ~ 34257193 (+)
G345598 NA non-coding upstream 87509 34230762 ~ 34231004 (+)
G345647 NA non-coding downstream 4301 34343174 ~ 34343383 (+)
G345648 NA non-coding downstream 4562 34343435 ~ 34343650 (+)
G345658 NA non-coding downstream 26289 34365162 ~ 34365672 (+)
G345681 stxb6 non-coding downstream 90937 34429810 ~ 34524839 (+)
G345682 NA non-coding downstream 97840 34436713 ~ 34438451 (+)
LOC110522521 NA other upstream 732202 33584945 ~ 33586386 (+)
G344647 NA other upstream 764510 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 828729 33469529 ~ 33489784 (+)
G343958 NA other upstream 1614142 32694986 ~ 32704371 (+)
G342707 LOC106608120 other upstream 2532307 31785865 ~ 31786206 (+)
LOC110522546 LOC106608201 other downstream 481569 34807607 ~ 34831281 (+)
G346334 NA other downstream 735066 35073939 ~ 35074338 (+)
G347151 NA other downstream 1494496 35833369 ~ 35833844 (+)

Expression


Co-expression Network