LOC110522537 (LOC106608171)


Basic Information

Item Value
gene id LOC110522537
gene name LOC106608171
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34394320 ~ 34397704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600986.2
CTACATGTTAAGTCCAGTCACGCACACTGTACAGTACAATGTGGTATGTTAAAAAAGAACTACTGGAGGCTGCCCACTAAGTTGTTTCTTTACACCCTCTCAGGCAACCCAAGCGATTACTCAACCGAGATAGATAAACTTGGCTGGGAGTGTATAGGCTAAGGAATTATTGCGGCTTTAAGTACAAACAAATGCTTAGGCTACTGTAAGGTCATGTATTGTTGCTTAGCCTGACAGACTGTCACATGTGTTTTTATACAGACACTAGTGTAGTATGTCATGGTACATCAGCAACCGATGCAGGCATGTTCCAATATAGTCTCTCCAGACAGAAGCAGCTTAGACGTTGTAGCCTCCATCATGACAACAATAATAGTCCACATACAGAATAGGCCTACAGAGAATACAGACCAgaactatagtctctctctccgCCACTACTCGTTCTGTCACTGTCATGTGGTGGTCTTACAGGCGACAGACATCCCCTGTGATTTGAGCTTATGACCAATCATTTTTATTACATATTAATATGCTACATTTCCGCCTTATACTTGGAGAACAATGAAAGTCAAAAACATGGTGCCTCTTTCTGACTATAAACATGGTGCCTCTTTCTGACTATCTCCAACAATATCCGCGCGTGACGCAAGGGGAGTATACTTAAATCAGGATTAGCTCTCCATCAACATTAAACTCAACTGCCCTCCATTCAAGCACCGCGCGACATACAGTCCCGCGCGCACGGTCGAAAATAGGAGGGCTTTCTACTAATCAGCACTCAGGCTCGCGCGAGCAAAAGTGCTGGGGTTGTCGAGTGAGCTTTTAGCAGAGGCGCAGAAGGTAGAAGGCATGAGCGAACGCAGAAGCGGTGGGTTACCAATGCATTCTCCAGATACTGGATCATCCGGAGTAAAACACGGGAAACAATAGATTCCACAGGAATTTTGCACAGTGCACGGTGTGCTATCGTCTCCGAATGAATGACCATGGGGGAGTGGACAATATTAGAGCGTCTCTTGGAGGCGGCTGTCCAACAGCATTCTACTATGATCGGAAGGATCCTCCTAACTGTGGTGGTGATCTTCCGGATTCTAATCGTTGCGATCGTTGGAGAAACGGTCTATGATGACGAGCAGTCCATGTTTGTGTGCAACACCCTGCAGCCCGGCTGTAACCAGGCCTGCTACGACAAGGCGTTCCCCATTTCCCACATCAGATATTGGGTGTTTCAGATTATTCTGGTGTGCACCCCCAGTCTCTGTTTCATCACCTACTCCGTGCACCAGTCCGCCAAGCAGAAGGAGCGTTTGGAGCGGGGGTACTCCACCGTGTTCCTCTCCTTGGACAAGCGCCATGATTCCATCAAAAGAGACGACAGCAAAAAGATcaaaaacaccattgtaaatggaGTACTTCAGAACACGGAGAACTCCACCAAAGAAGCCGAGCCCGACTGCTTGGAGGTGAAGGACATCCCAAATTCGGCCATGAGAACTAGTGGAAAGTCTAAAATGAGGAGGCAGGAGGGAATCTCAAGATTCTACATCATCCAAGTGGTTTTCCGAAACGCGCTAGAGATAGGGTTCCTGGTGGGTCAATATTTTCTGTATGGATTCAATGTCCCCGCGGTATATGAGTGTGATCGATACCCCTGCATCAAAGATGTAGAATGCTACGTTTCCAGGCCCACGGAAAAGACAGTGTTTCTGGTCTTCATGTTTGCGGTCAGTGGCGTCTGTGTGCTCCTGAACTTGGCTGAACTCAATCATCTTGGGTGGAAGAAGATCAAAGTAGCTGTCAAAGGCGTGCAGGCCAGGAGGAAGTCCATCTACGAGATCCGTAACAAAGACTTGCCTAGAATGAGCATGCCAAATTTCGGCCGCACTCAATCAAGTGACTCTGCCTATGTGTAGCTGTCGATTTCAATACAACTGAATGGAACAATTGTAGCCTACAAAGAATTCACATATATTTATTAATAATGTGGTAGATATTTTATCTCACCGACTTCGTTTGCGAAGTAGGTCGGGTATATcgattgtatttgtattttatggATAAGTAAAAAACAAACGGACCAAAACGTTTGTTagtcatatatatacacatatacacatacgaGAAGGCACTGATGCAACTTTTTAGTATGGTTTATCCTATATTTTGTAAAGTGCTTCTTAAAAGCATGAATTTGTGTTGACATATTCACTCTGTCGTTCACTTCAGCTGTTGAACATGGAGCAAATACCTGCACTAAATATGAATAATGAGGCAAAATATATCCGATTTGTGACGATAATGACGTCTTTTAATGACATTCTGCCGGTTTTAAACTCCACATATCATTATAGGCACGAAACATACACATTATTTGGCAGTTTTAGGGTCAATATTCCTCAAATGTACACAAATGCATATTCATTCTTCTAGTAGGCTAGATCACTCCTTTCACATATTTGTCAGATAGATCTATGACATTAGCACTATAAAAGTTGTTTTGGTTGCCTGAGTTTGCACCATTGACCTTAACCTATGTGATCACTCCattggggaaagggggggggggtgacttttTATTTACACCCAAGCGCCCATTCCTTTTATTTACGTGGAAATTGATTTTCATGTCATCAAGTGCCATATTTGTACATAAATATAAACATGACCATATCTATAAAGTATTCTCTTCATTCCAGTAAAGGCTGTTGTCATCTTGGATTTAAATCACTGTGGTTTCTATGTAAATGGTATGCTACTATATTATTATCTCTGGTTTCATTTGCaacatacaaaaataaacaaCCTTTGCATATTCAAAAAGTATTGACGAGCAATTAGTCAAATAGACCACACATCTATAGTAAGCTGGAATCAATAACAAAGGGCAATAGATGTTGGCCCCTGGTGCTGCCATTTTCCAAAGCACTGATTTAAAGTATCAATGTACACTACATGgtgaaaagtatgtggacaccccttcaa

Function

NR:

description
PREDICTED: gap junction delta-2 protein-like

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K07373 GJD2, CX36; gap junction delta-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600986.2 True 2985 mRNA 0.43 2 34394320 34397704

Neighbor

gene id symbol gene type direction distance location
LOC110522536 LOC105024319 coding upstream 145 34390869 ~ 34394175 (+)
LOC110522535 LOC106608172 coding upstream 30065 34357090 ~ 34364255 (+)
LOC110522534 LOC106608173 coding upstream 55447 34318513 ~ 34338873 (+)
LOC110520988 LOC106571729 coding upstream 165048 34226453 ~ 34229272 (+)
LOC110522532 LOC106608175 coding upstream 195268 34168250 ~ 34200246 (+)
LOC110522540 LOC106608169 coding downstream 57488 34455192 ~ 34459207 (+)
LOC110522530 LOC106608164 coding downstream 139246 34536950 ~ 34541410 (+)
LOC110522544 LOC106571654 coding downstream 222196 34619900 ~ 34627191 (+)
rdh14b rdh14 coding downstream 229661 34627365 ~ 34630001 (+)
LOC110522546 LOC106608201 coding downstream 409903 34807607 ~ 34831281 (+)
G345658 NA non-coding upstream 28648 34365162 ~ 34365672 (+)
G345648 NA non-coding upstream 50670 34343435 ~ 34343650 (+)
G345647 NA non-coding upstream 50937 34343174 ~ 34343383 (+)
G345634 NA non-coding upstream 87794 34300560 ~ 34306526 (+)
G345627 NA non-coding upstream 104532 34285276 ~ 34289788 (+)
G345681 stxb6 non-coding downstream 32106 34429810 ~ 34524839 (+)
G345682 NA non-coding downstream 39009 34436713 ~ 34438451 (+)
G345688 NA non-coding downstream 41379 34439083 ~ 34441745 (+)
G345967 NA non-coding downstream 166079 34563783 ~ 34564321 (+)
G345968 NA non-coding downstream 168364 34566068 ~ 34566283 (+)
LOC110522521 NA other upstream 808009 33584945 ~ 33586386 (+)
G344647 NA other upstream 840317 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 904536 33469529 ~ 33489784 (+)
G343958 NA other upstream 1689949 32694986 ~ 32704371 (+)
G346334 NA other downstream 676235 35073939 ~ 35074338 (+)
G347151 NA other downstream 1435665 35833369 ~ 35833844 (+)
G347178 NA other downstream 1510542 35908246 ~ 35908451 (+)

Expression


Co-expression Network