LOC110522540 (LOC106608169)


Basic Information

Item Value
gene id LOC110522540
gene name LOC106608169
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34455192 ~ 34459207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600992.2
TGAGGGTATGTGCACAGGACACCGTAGTGACGGAAGTGCCTGCTATGGAGGATACGAATGTATTTTTTATCCACGGGTTTGATCATAAATCGGTTTATTTATCGTTAGCCAGATTAAAAATGGCAGCAGTGTTTCTAGTTATGTTGTATGAATATTCTCCTTTATTTTACATTAGTGTCATATCCTTATGTTTCGTTGTTACCGCCGCCATGGTCCTCGGCTGGTTTGGTTTCGATGTCCCAGTGATTCTTCGTAGCTCTGATGAGACTGAGTCAGTCTTGCCTGTCCCAGAGAAGAGGATGGTTCAGGTGACCAACCCCTTTGCCCTGGAGATGGGGACCTCTGGGGTGGCCTCTGTGACTGAGGGTGTGTCCCTGCGTCCATGCTGCCTGGAGCCCTGTGTTCTGAGCTGTTACTGGGGTTGTGGTGTCCATGCCCTCCAGGGGGCGCTACAGACCCACCAACATGGCCCCAGCAGGCTCAGCACACCACAACAGTTCCAGGAAGCCCTGCACTTCCAGTACCACCACTGCCAAAGTTTCCATATCagtggagagaacagagaggagcactACAGCGAGATGCCAGCTGAACTGAGGATCACTGATTTTGGTCATTTGCCACGGGAACGTTATCCCCTGGTGGCTCTCCTCACCCTGGCTGAGCCTGAAGCCAGGGACACATACAACATTGCCGCCAGTGTCACCGTAGTCCATGTTCCAGATGACAAATACAGCCTGTCGGCACGGATCCTGTTTCAATACCTCCTCACGGCACAAGGGAACATGTATGAGTTAAAGTCACTCTTTATGTCAGCTGAGAGCATGGGGTTGTCAGGGGCGACTGACCCCGCCCCTAGCACAGAGATACCACCAGAACGACAGGAAAGAGAACATggaaaggaggaagagaagacaCCAGGAATGGAAGATGAAGAGGAGTGGTCACAGGAGGGAAAAGCCAAAGACTGTGTTGTGTGTCAGAATGCACCTGTTAACCGTGTTCTGCTACCCTGCAGGCACGCCTGTGTGTGTGACGGCTGTGTCCATCACTTCCAACACTGCCCCATATGCAGAGCTTTCGTATTGGAGTCGTTTGCCCTGTTCCACAATTCCCCTATGggggaggaagatgaggaagaatGAACTGTGATGCAGCAGGTCAATGTCATTAGAGTAGCTGTATGGTGGCCAGGATGTGCATGATCATTATCACTATAGGTACTGGTCCAATACAGATATAATAGTACCGTTTCATGGGAATCAGTGTCTATCATAGAATGGATGTGATATGGTTTTACGCCAAAGTCAtctattggacatttcaaactgtTGTAGGGCTGTGAGCATATACATTTTATCACGTTGATAGTTGTGTTGTAAACTATTCCTTAATcggtttgtaaacaatgtaagtAGATATGGAGAACCTACTATGTTTTTATGTGTAATGTAtagatgtattttatttattatcaATATACCATACATTAagttgtt

Function

NR:

description
cell growth regulator with RING finger domain protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600992.2 True 1499 mRNA 0.47 6 34455192 34459207

Neighbor

gene id symbol gene type direction distance location
LOC110522537 LOC106608171 coding upstream 57488 34394320 ~ 34397704 (+)
LOC110522536 LOC105024319 coding upstream 61017 34390869 ~ 34394175 (+)
LOC110522535 LOC106608172 coding upstream 90937 34357090 ~ 34364255 (+)
LOC110522534 LOC106608173 coding upstream 116319 34318513 ~ 34338873 (+)
LOC110520988 LOC106571729 coding upstream 225920 34226453 ~ 34229272 (+)
LOC110522530 LOC106608164 coding downstream 77743 34536950 ~ 34541410 (+)
LOC110522544 LOC106571654 coding downstream 160693 34619900 ~ 34627191 (+)
rdh14b rdh14 coding downstream 168158 34627365 ~ 34630001 (+)
LOC110522546 LOC106608201 coding downstream 348400 34807607 ~ 34831281 (+)
LOC110522552 LOC106608197 coding downstream 433922 34893129 ~ 34900917 (+)
G345688 NA non-coding upstream 13447 34439083 ~ 34441745 (+)
G345682 NA non-coding upstream 16741 34436713 ~ 34438451 (+)
G345658 NA non-coding upstream 89520 34365162 ~ 34365672 (+)
G345648 NA non-coding upstream 111542 34343435 ~ 34343650 (+)
G345647 NA non-coding upstream 111809 34343174 ~ 34343383 (+)
G345967 NA non-coding downstream 104576 34563783 ~ 34564321 (+)
G345968 NA non-coding downstream 106861 34566068 ~ 34566283 (+)
G346002 NA non-coding downstream 157591 34616798 ~ 34617208 (+)
G346003 NA non-coding downstream 158131 34617338 ~ 34617753 (+)
G346040 NA non-coding downstream 223658 34682865 ~ 34683139 (+)
LOC110522521 NA other upstream 868881 33584945 ~ 33586386 (+)
G344647 NA other upstream 901189 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 965408 33469529 ~ 33489784 (+)
G343958 NA other upstream 1750821 32694986 ~ 32704371 (+)
G346334 NA other downstream 614732 35073939 ~ 35074338 (+)
G347151 NA other downstream 1374162 35833369 ~ 35833844 (+)
G347178 NA other downstream 1449039 35908246 ~ 35908451 (+)

Expression


Co-expression Network