LOC110522544 (LOC106571654)


Basic Information

Item Value
gene id LOC110522544
gene name LOC106571654
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34619900 ~ 34627191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976151.1
GCTATGTAAATTTCGTAGAGTAATGTAAGGGAGGATGCTGTCTGCTATTTCCACTTTTCCATCAATAAAAGCTAGCCGATTCAAATTACTGAATTAAAAAGAAAAAAGGAAATAATATTCTCAAGGGGGCATTAGTCCAGAATACAATTAACATGGCATCGAAATGTCCTAAATGCGACAAGACAGTTTATTTTGCGGAGAAGGTGACATCTCTGGGGAAAGACTGGCATAAGTTCTGTCTGAAATGTGAGCGTTGTAACAAGACCCTGAACCCAGGGGGCCATGCTGAGCATGATGGAACTCCGTATTGCCACAAGCCATGCTATGCTGCCCTCTTTGGACCAAAAGGTGTGAATATTGGAGGTGCTGGCTCTTATGTCTACGAGGCGCCTGTCAATGATACCCCTGCCAGCGTTTCCACGGAAACAGAGGCCAAACCTGAGGAGAAGAAAGCTCATGCCAGAGGCCCAGTGAAGGCCGCAAGCTTCTCAACTTTCTCCGGAGAACCCAGTAAATGCCCAAGGTGCAGCAAGACAGTGTATTTCGctgagAAGGTGACGTCCCTAGGGAAGGACTGGCATCGACCCTGTCTGCGCTGTGAGAGGTGCAGCAAGACCCTGGCCCCAGGCAGTCACGCAGAGCATGATGGGCAGGCCTACTGCCACAAACCGTGCTACGCCACCCTGTTTGGGCCCAAAGGGGTGAACACTGGAGGTGTAGGAAGCTACATCTACCATGAACCCAGCACCGAGGCAGAGACTGAGGCCCAGCCTTGAGTTTACCCATACCCACCCAGACCTCTTCAACATTGCCTCCCTTACCCAGGCCTTGTTACTAACCCCAGTCGTAGATAGACTCACCCTATCTGTATTTCCAACCTCTGCCTACACCTTTGACTATGTTCACACCTGCCCTGATTAAATAGTATTGTCTCCTTTTGGCTATTCAGCATctacagaaaaaaaaacacatgttAAATCATACATAGTGTAGGCCTATTTAGAATGTTCTGTTGTATTTCTACATAAATTTTGTGTACGAAATGTCATCTTTATAGCTTCTCCCATCTAGCTAGCTTCTCCCTGTGAAATACACAGTAGGTTCATGGGTGTCCTCTACCTCGTTGTTCGTGTCAAATGAACAGTTGTGTGTAAGATGTACAGTACATTGTTTATTAAATGATAAGTCGCCATATGGTTTGACTCTACACAATACAGCCCACACCTATAGGGGAAGACTTGGGTGTGGTAGGCCTACTGTTTGTCATTCCCTGAAAACTATGTCCTTTGTTGTGCACCAGTAATGACATGGCTGACACAACTGCGTGATGTCCAAGCTATCCGCTATGGGCCTATTTTCACCCtgcagtatagagacagagtagATAGATAGAACATACGGCTACTAGGAATGTGCATTAGTATTAGCCTATTGTTGTTGGTGATTGAATATGTTTTGTACTTTGTGTCTTTGAGCACCAAATGTGTGTTACTGAGAAGAACAGTGGTCATCAGAGGTTTTCTACAATAAAATTGTGAGAACAGGAAAGG

Function

NR:

description
cysteine-rich protein 2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24413 CRIP2_3, CRP2_3; cysteine-rich protein 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976151.1 True 1550 mRNA 0.46 8 34619900 34627191

Neighbor

gene id symbol gene type direction distance location
LOC110522530 LOC106608164 coding upstream 78490 34536950 ~ 34541410 (+)
LOC110522540 LOC106608169 coding upstream 160693 34455192 ~ 34459207 (+)
LOC110522537 LOC106608171 coding upstream 222196 34394320 ~ 34397704 (+)
LOC110522536 LOC105024319 coding upstream 225725 34390869 ~ 34394175 (+)
LOC110522535 LOC106608172 coding upstream 255645 34357090 ~ 34364255 (+)
rdh14b rdh14 coding downstream 174 34627365 ~ 34630001 (+)
LOC110522546 LOC106608201 coding downstream 180416 34807607 ~ 34831281 (+)
LOC110522552 LOC106608197 coding downstream 265938 34893129 ~ 34900917 (+)
LOC110521087 LOC106608196 coding downstream 275659 34902850 ~ 34916426 (+)
LOC110522553 LOC106608207 coding downstream 303059 34930250 ~ 34970463 (+)
G346003 NA non-coding upstream 2147 34617338 ~ 34617753 (+)
G346002 NA non-coding upstream 2692 34616798 ~ 34617208 (+)
G345968 NA non-coding upstream 53617 34566068 ~ 34566283 (+)
G345967 NA non-coding upstream 55579 34563783 ~ 34564321 (+)
G345681 stxb6 non-coding upstream 95061 34429810 ~ 34524839 (+)
G346040 NA non-coding downstream 55674 34682865 ~ 34683139 (+)
G346054 NA non-coding downstream 85427 34712618 ~ 34713059 (+)
G346175 NA non-coding downstream 100502 34727693 ~ 34727932 (+)
G346186 5nt1a non-coding downstream 134682 34761873 ~ 34800749 (+)
G346192 NA non-coding downstream 139201 34766392 ~ 34767694 (+)
LOC110522521 NA other upstream 1033589 33584945 ~ 33586386 (+)
G344647 NA other upstream 1065897 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 1130116 33469529 ~ 33489784 (+)
G346334 NA other downstream 446748 35073939 ~ 35074338 (+)
G347151 NA other downstream 1206178 35833369 ~ 35833844 (+)
G347178 NA other downstream 1281055 35908246 ~ 35908451 (+)
LOC110522562 LOC105017690 other downstream 1411975 36039096 ~ 36123362 (+)

Expression


Co-expression Network