rdh14b (rdh14)


Basic Information

Item Value
gene id rdh14b
gene name rdh14
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34627365 ~ 34630001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600994.2
GAGCACATGAGCATGTGAAGGTTTTGCAAAGCCTTGTGGATGTTGTTGTTCATTCCTTTCTCACTGTGTTACATAAATATTGTAAGTGAAACATAAAAGTATTCGCTTTAATGTCAGCTGCGATTATTGTGGCCGCTGTCGTCGGCGGTGGAATACTGCTAATTGTTCGCAGAATGTTCCCCCGGAAGAAAGCGGTCGAGTTGCTCCGGTACCCGGCCGATATGATGCGGGGAAAGACTGTCATTGTGACCGGGGCGAACAGCGGCATAGGGAAGGCCGCGGCCGGGGAGCTGCTCAAACTCCAGGCCCGGGTGATCATGGCCTGTCGGGATCAGCAGATGGCTGAGGAAGCTGCGCAGGACATCAAGAAGCAAGCGGGGCCAGAGCACGGAGAGGTGGTGATCAAACACCTGGACCTCGCCTCGCTTCAGTCTGTGCGGAGCTTTTGCGAGGAGATCCTGAAGGAAGAACAACAAGTCGACGTGCTCATCAACAACGCAGGCATTTACCAGTGTCCCTACACGAAGACAGAGGAGGGGTTTGAGATGCAGCTGGGGGTCAACCACCTGGGTCACTTCCTCCTCACCCACCTCCTCCTGGACCTCCTCAAGCGCTCCTCCCCCAGCCGCGTGGTGGTGGTCTCCTCCAAGCTCTACAAGTATGGCAGCATCAACTTCGACGACCTCAACAGTGAGAGAAGCTACAACAAAGCCTTCTGCTACAGCCAGAGCAAGCTGGCTAATCTGCTCTTCACCCACCAACTGGCCCGGCGCCTGGAGGAGGAGGGCGTCACGGGGGTAACGGTCAATGCCCTCACCCCAGGCATCGTGAGGACCAGGCTGGGCAGGCACATCCACATCCCCTTCCTGGCCAAACCTCTCTTTTACCTGGCCTCGTTGTTCTTCTTCAAGAGCCCACTGGAGGGAGCTCAGACGCCACTCTACCTGGCGTGTTCACCCGACGTGGAGGGCGTGGCGGGGAAGTGCTTCGCTAACTGCGAGGAGGAGGAGCTGATGCCCAAGGCGACGGACGATCAGGCGGCCAAGAGACTGTGGGACCTGAGTGAGACCATGGTGGGGATAAAAACTCAATAAGAGACCTGGGTTCCAGACTCTCTTATAGAGACCATATGAGAGACTTGCCCTGGGAATCAAGTGAATTGGGAGATGATTGATTGAGACTTCTTGGGGTTTCATTGGAACTGGGGTCAGTGGGTAAAGTTTCCACTGTTTTTAATTAACCTCGGtatgtgggtgcgtgtgtgtgtgtgggcgcgtGCATGCGTGGGTCCGTGTGTGCACCTATAATTGTGTGATGTGCAAATGAGGTGTGGATGGAGTGTGAGTGTGATTGGAGGTGTGCAATGTGCCTGTGAAACTGAGAACTGCAGTCTTCCATGAATGTGTAACTAAGTATATCCGTTCCCATAGGAACCAGCTATTCTATCTCCTGTACTGTCTTCACCAGTGTTCACTGAATCAGAAGTTCACACAGTCAAAGTGGAGGGGAGCTAATTCCCAGTAGCGATTATCAAAGGGGAGCTGAACTGTCATATTTGCTTTTTCCGAGTGCGAACATGATTGGTTATAGTGCTATAGAAATATCTCCGGGGTGGTTTGAAAAGCCAACAGGTATGTAGTTCAGCAGCTGTAAGTAAATGCGAAGGCGGCTAAGCTCATGCATCCTGCAGCATGCACTTGGCAGTAGAAAAAGGAATAGGAGACTGGTTGTGTTGCGTTACCTAATCCAGTTTTCCTCTCATGATGTGTTTGACGTGTGAATTCGTCACCTTCTGCTGTGACAGGATGGACGGGAACAATAAAGTTGACAATGAGATTCAGATTCAGTCAGA

Function

symbol description
rdh14 Enables NADP-retinol dehydrogenase activity. Involved in osteoblast differentiation. Located in cytosol; endoplasmic reticulum; and nucleoplasm.

NR:

description
retinol dehydrogenase 14-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11162 RDH14; retinol dehydrogenase 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600994.2 True 1852 mRNA 0.52 3 34627365 34630001

Neighbor

gene id symbol gene type direction distance location
LOC110522544 LOC106571654 coding upstream 174 34619900 ~ 34627191 (+)
LOC110522530 LOC106608164 coding upstream 85955 34536950 ~ 34541410 (+)
LOC110522540 LOC106608169 coding upstream 168158 34455192 ~ 34459207 (+)
LOC110522537 LOC106608171 coding upstream 229661 34394320 ~ 34397704 (+)
LOC110522536 LOC105024319 coding upstream 233190 34390869 ~ 34394175 (+)
LOC110522546 LOC106608201 coding downstream 177606 34807607 ~ 34831281 (+)
LOC110522552 LOC106608197 coding downstream 263128 34893129 ~ 34900917 (+)
LOC110521087 LOC106608196 coding downstream 272849 34902850 ~ 34916426 (+)
LOC110522553 LOC106608207 coding downstream 300249 34930250 ~ 34970463 (+)
LOC110521089 LOC106608211 coding downstream 619616 35249617 ~ 35418424 (+)
G346003 NA non-coding upstream 9612 34617338 ~ 34617753 (+)
G346002 NA non-coding upstream 10157 34616798 ~ 34617208 (+)
G345968 NA non-coding upstream 61082 34566068 ~ 34566283 (+)
G345967 NA non-coding upstream 63044 34563783 ~ 34564321 (+)
G345688 NA non-coding upstream 185620 34439083 ~ 34441745 (+)
G346040 NA non-coding downstream 52864 34682865 ~ 34683139 (+)
G346054 NA non-coding downstream 82617 34712618 ~ 34713059 (+)
G346175 NA non-coding downstream 97692 34727693 ~ 34727932 (+)
G346186 5nt1a non-coding downstream 131872 34761873 ~ 34800749 (+)
G346192 NA non-coding downstream 136391 34766392 ~ 34767694 (+)
LOC110522521 NA other upstream 1041054 33584945 ~ 33586386 (+)
G344647 NA other upstream 1073362 33552127 ~ 33554003 (+)
LOC110521085 LOC100380634 other upstream 1137581 33469529 ~ 33489784 (+)
G346334 NA other downstream 443938 35073939 ~ 35074338 (+)
G347151 NA other downstream 1203368 35833369 ~ 35833844 (+)
G347178 NA other downstream 1278245 35908246 ~ 35908451 (+)
LOC110522562 LOC105017690 other downstream 1409165 36039096 ~ 36123362 (+)

Expression


Co-expression Network