LOC110522547 (5nt1a)


Basic Information

Item Value
gene id LOC110522547
gene name 5nt1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34731546 ~ 34784324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601001.2
tgcttgtataTATGAGCTCTGTCAGAACGTGTTAGGCAGACCACAATATAGGTGAAGTCAACTGGCAAACGAGTTGCATTTTTGAACAGTGATAGTCAAAGCGACCTTTAGCCTATCCCATGAGTGTTTGCGAGTTATATGACATATCAGATCTGTTGTAAGAGAATGCTGAACAACAGAGTTAGACACGCCGATCCAAACATTTCCATAACGGTGTCATCGCTTGGTCTGTCCATCTACATTTGGAATCAGTGTTACGGATCTACCAGACCTAGAACTTTTCCATCCCAGGCCAAATATGAGTGAAATCAAACCTACCGATCCAGCAGCCACTAACGCTGGAGAGGAAAAGGACTGGACAGCATCAGCCTGTTCTGACAGTTTAAAAACAAGGAAACCTAGAACCCCCAAACCCCAGAATGCCGTGACAATCGCCGTCTCCTCTCGAACCCTTTTCAACATGGATGAGGAACGGAAGATCTATCAGGAAGAGGGAGTCGAGAAGTATATGGCCTACATGAATCAACAGGAGCACGAGAATGAGCCACTCATGCCAGGTGTTGCGTTTCCCCTTGTGAAGgcTCTGATGACGGTAAACTCCAGACTGAGGCAGCTCTACCCCGACAGTGAGGAGCTGTTTGACATCGTCCTGATGACTAATAACCACGCCCAGGTCGGGGTGCGCCTCATCAACAGCATCAACCACTACGATTTAACCATTGAGAGATTCTGTATGACTGGAGGGAAAAGCCCCATTGGCTATCTGAAGGCCTACATGACCAACCTGTACCTCTCCAAGGATGGAGAGAAAGTCACTGAGGCCATTGAGGAGGGCATTGCTGCAGCGACCATGTTTGCATCTGGAGATGTGGAGAACCAGCTGTCCGACACACAGCTGAAAGTAGCTTTTGACGGAGACGCAGTCCTCTTCTCTGATGAGTCGGAGATCATCGCGAAACAACGTGGCCTGGATAAGTTCTTTGAGCACGAGCAGGAGTTTGAGAACATACCTCTTAAAAAGGGTCCCTTGAAGTGTTTCCTGGAGGTGCTGGGGAAGCTCCAGAGAAAGTTCTACGCCAAGAACGAGCGTATGACCTGCCCCATTCGTACCTACTTGGTAACAGCCCGCAGTGCAGCCAGCTCAGGGGCCCGTGTCCTCAAGACGCTCAGGAGCTGGGGCCTGGAGATCGACGAAGCCCTGTTCCTAGCCGGGGCCCCCAAAGGGCCTCTCCTGCAAATGATCCGTCCCCACATATTCTTTGACGACCAGATGTTCCACATCGAGGGAGCCAAGGAGCTGGGGACCATCGCTGCACACGTGCCTTATGGGATCGGACAGAAGTATCACAAGGGGGAACTTATTGAGCAGCCTGACAAAGATGTCAAAGACAAGAAGTAAAgagcctcctagtggtgggtaGATATCATATGTTATGCAAATGCTTAGTTGCACACAACCCTGTCATCAGCTGTAGGACCTTTATTGTTTATCAGAATTTTATATTATTTCTCTTTTTTACACATTATTACAAACATCTTTATCAGATAATATTGTATCAACAGGAGAAAAAAACACATTGTTTAGGACTGTAGATGTAATACTCACATCAGGGACCAATGTCACCTAATGTTCTCTGTCATGAGGAGAGAAAGGATCACTTTCCTACAATCCTCATCACCATCACATTGTAGTCTTTAATAGTATTTGGTAAAATATGtagtttttttaatgaaaatgtcATAGGGTGTTCAAATTTTACACATGAAAGTATATTTAGAAAAGTGTATTTTATATCTTTAGATATGTGCACTCTAGTGCACTAACAAGGTAGAATGGTTATTGATATGAAGCGCTGAAAAAATATATGCGTTTTGGTTTTACTGCACACCATACAAAACAGACATTaacacattatttatttattatttacacTTAGATGCAGTCGGGATCTTAAGCACTTACAAACTCGTACCATATTATAcgaattgcattttttttttgcaggacatgacatatcatacaaaatggatgatgtagtacacaattgTGCATATTTTTCGGGGACCCATTTTGGCTCGTGAGGACGACTTTAAAAAATATTGTCTGAAATGTACTGAACTTTAGAAGCAAAACTTCAATGTTCAATCCCCCTTTACTATCCATGCATTGTTCTAATCTATTTCATTTTCTTATTCCATTTAATAATACTTGTTTTTAGATGCAAGAAACCTCACCTTGCTCTTAGTAAAGCTGTATTAGGCTATATGTTATATCAAAACCTCAAGCAAGCTAGTTCAACATATCTGTTTCACGAGTAAAATGTTACGTGTCAGGCGTTCTGTTTCAAATAGTTTACAGCTGAATATACAcaatgttttgtttatttttttcagttttaactgaacctaaagggttctatatataaaTGCAATATATAAAGTGTttttcccatgtttcatgagctgaaataaaagatcccagaaatgttcca
>XM_036976154.1
CCAGACCTAGAACTTTTCCATCCCAGGCCAAATATGAGTGAAATCAAACCTACCGATCCAGCAGCCACTAACGCTGGAGAGGAAAAGGACTGGACAGCATCAGCCTGTTCTGACAGTTTAAAAACAAGGAAACCTAGACCCCCCAAACCCCAGAATGCCGTGACAATCGCCGTCTCCTCTCGAACCCTTTTCAACATGGATGAGGAACGGAAGATCTATCAGGAAGAGGGAGTCGAGAAGTATATGGCCTACATGAATCAACAGGAGCACGAGAATGAGCCACTCATGCCAGGTGTTGCGTTTCCCCTTGTGAAGgcTCTGATGACGGTAAACTCCAGACTGAGGCAGCTCTACCCCGACAGTGAGGAGCTGTTTGACATCGTCCTGATGACTAATAACCACGCCCAGGTCGGGGTGCGCCTCATCAACAGCATCAACCACTACGATTTAACCATTGAGAGATTCTGTATGACTGGAGGGAAAAGCCCCATTGGCTATCTGAAGGCCTACATGACCAACCTGTACCTCTCCAAGGATGGAGAGAAAGTCACTGAGGCCATTGAGGAGGGCATTGCTGCAGCGACCATGTTTGCATCTGGAGATGTGGAGAACCAGCTGTCCGACACACAGCTGAAAGTAGCTTTTGACGGAGACGCAGTCCTCTTCTCTGATGAGTCGGAGATCATCGCGAAACAACGTGGCCTGGATAAGTTCTTTGAGCACGAGCAGGAGTTTGAGAACATACCTCTTAAAAAGGGTCCCTTGAAGTGTTTCCTGGAGGTGCTGGGGAAGCTCCAGAGAAAGTTCTACGCCAAGAACGAGCGTATGACCTGCCCCATTCGTACCTACTTGGTAACAGCCCGCAGTGCAGCCAGCTCAGGGGCCCGTGTCCTCAAGACGCTCAGGAGCTGGGGCCTGGAGATCGACGAAGCCCTGTTCCTAGCCGGGGCCCCCAAAGGGCCTCTCCTGCAAATGATCCGTCCCCACATATTCTTTGACGACCAGATGTTCCACATCGAGGGAGCCAAGGAGCTGGGGACCATCGCTGCACACGTGCCTTATGGGATCGGACAGAAGTATCACAAGGGGGAACTTATTGAGCAGCCTGACAAAGATGTCAAAGACAAGAAGTAAAgagcctcctagtggtgggtaGATATCATATGTTATGCAAATGCTTAGTTGCACACAACCCTGTCATCAGCTGTAGGACCTTTATTGTTTATCAGAATTTTATATTATTTCTCTTTTTTACACATTATTACAAACATCTTTATCAGATAATATTGTATCAACAGGAGAAAAAAACACATTGTTTAGGACTGTAGATGTAATACTCACATCAGGGACCAATGTCACCTAATGTTCTCTGTCATGAGGAGAGAAAGGATCACTTTCCTACAATCCTCATCACCATCACATTGTAGTCTTTAATAGTATTTGGTAAAATATGtagtttttttaatgaaaatgtcATAGGGTGTTCAAATTTTACACATGAAAGTATATTTAGAAAAGTGTATTTTATATCTTTAGATATGTGCACTCTAGTGCACTAACAAGGTAGAATGGTTATTGATATGAAGCGCTGAAAAAATATATGCGTTTTGGTTTTACTGCACACCATACAAAACAGACATTaacacattatttatttattatttacacTTAGATGCAGTCGGGATCTTAAGCACTTACAAACTCGTACCATATTATAcgaattgcattttttttttgcaggacatgacatatcatacaaaatggatgatgtagtacacaattgTGCATATTTTTCGGGGACCCATTTTGGCTCGTGAGGACGACTTTAAAAAATATTGTCTGAAATGTACTGAACTTTAGAAGCAAAACTTCAATGTTCAATCCCCCTTTACTATCCATGCATTGTTCTAATCTATTTCATTTTCTTATTCCATTTAATAATACTTGTTTTTAGATGCAAGAAACCTCACCTTGCTCTTAGTAAAGCTGTATTAGGCTATATGTTATATCAAAACCTCAAGCAAGCTAGTTCAACATATCTGTTTCACGAGTAAAATGTTACGTGTCAGGCGTTCTGTTTCAAATAGTTTACAGCTGAATATACAcaatgttttgtttatttttttcagttttaactgaacctaaagggttctatatataaaTGCAATATATAAAGTGTttttcccatgtttcatgagctgaaataaaagatcccagaaatgttcca

Function

NR:

description
cytosolic 5'-nucleotidase 1A-like

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601001.2 False 2492 mRNA 0.42 6 34731546 34747546
XM_036976154.1 True 2227 mRNA 0.42 6 34731546 34784324

Neighbor

gene id symbol gene type direction distance location
LOC110522545 LOC106608202 coding downstream 49299 34630309 ~ 34682247 (-)
LOC110522542 LOC106608165 coding downstream 253100 34474714 ~ 34478446 (-)
LOC110522539 LOC106608168 coding downstream 268188 34459313 ~ 34463358 (-)
LOC110521086 LOC106608167 coding downstream 276353 34440901 ~ 34455193 (-)
LOC110522538 stxb6 coding downstream 295296 34429884 ~ 34436250 (-)
LOC110522548 5nt1a coding upstream 14833 34799157 ~ 34807617 (-)
LOC110522550 LOC106571659 coding upstream 48112 34832436 ~ 34886570 (-)
LOC118964469 NA coding upstream 116699 34901023 ~ 34902127 (-)
LOC110522554 LOC106608208 coding upstream 205222 34989546 ~ 35064960 (-)
LOC110521088 p4hb coding upstream 533428 35317752 ~ 35326364 (-)
G346174 NA non-coding downstream 4843 34726165 ~ 34726703 (-)
G346173 NA non-coding downstream 5701 34725581 ~ 34725845 (-)
G346146 NA non-coding downstream 44750 34686477 ~ 34686796 (-)
G346111 NA non-coding downstream 115279 34616063 ~ 34616267 (-)
G346106 NA non-coding downstream 125452 34605805 ~ 34606094 (-)
G346571 NA non-coding upstream 38499 34822823 ~ 34823122 (-)
G346572 LOC106608201 non-coding upstream 40312 34824636 ~ 34825046 (-)
G346573 NA non-coding upstream 41156 34825480 ~ 34826807 (-)
G346576 NA non-coding upstream 44161 34828485 ~ 34828695 (-)
G346577 NA non-coding upstream 45643 34829967 ~ 34830194 (-)
G345255 LOC106585892 other downstream 941461 33789494 ~ 33790085 (-)
G345248 NA other downstream 950908 33780297 ~ 33780638 (-)
LOC110522529 LOC106608176 other downstream 978653 33749940 ~ 33940233 (-)
G344164 NA other downstream 1869442 32841256 ~ 32862104 (-)
G343300 antiprot1 other downstream 2607660 32107969 ~ 32123886 (-)
G346754 NA other upstream 433000 35217324 ~ 35217782 (-)
G347016 NA other upstream 767749 35552073 ~ 35552585 (-)

Expression

LOC110522547(5nt1a) Expression in all Baseline Samples

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LOC110522547(5nt1a) Expression in each Bioproject

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LOC110522547(5nt1a) Expression in each Sample
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Co-expression Network