Item | Value |
---|---|
gene id | LOC110521087 |
gene name | LOC106608196 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048568.1 |
NCBI id | CM023222.3 |
chromosome length | 46841314 |
location | 34902850 ~ 34916426 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
cleavage and polyadenylation specificity factor subunit 2 |
id | name | namespace |
---|---|---|
GO:0006378 | mRNA polyadenylation | biological_process |
GO:0006379 | mRNA cleavage | biological_process |
GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | cellular_component |
GO:0016787 | hydrolase activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036976157.1 | False | 3950 | mRNA | 0.51 | 15 | 34902850 | 34916426 |
XM_036976158.1 | False | 3810 | mRNA | 0.51 | 16 | 34902850 | 34916426 |
XM_036976159.1 | False | 3897 | mRNA | 0.51 | 15 | 34902850 | 34916426 |
XR_005051525.1 | False | 3757 | mRNA | 0.51 | 16 | 34902850 | 34916426 |
XM_036976160.1 | False | 3786 | mRNA | 0.50 | 11 | 34905099 | 34916426 |
XM_036976161.1 | True | 3749 | mRNA | 0.50 | 12 | 34905099 | 34916426 |
34,894,000
34,896,000
34,898,000
34,900,000
34,902,000
34,904,000
34,906,000
34,908,000
34,910,000
34,912,000
34,914,000
34,916,000
34,918,000
34,920,000
34,922,000
34,924,000
NC_048568.1
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110522552 | LOC106608197 | coding | upstream | 1933 | 34893129 ~ 34900917 (+) |
LOC110522546 | LOC106608201 | coding | upstream | 71569 | 34807607 ~ 34831281 (+) |
rdh14b | rdh14 | coding | upstream | 272849 | 34627365 ~ 34630001 (+) |
LOC110522544 | LOC106571654 | coding | upstream | 275659 | 34619900 ~ 34627191 (+) |
LOC110522530 | LOC106608164 | coding | upstream | 361440 | 34536950 ~ 34541410 (+) |
LOC110522553 | LOC106608207 | coding | downstream | 13824 | 34930250 ~ 34970463 (+) |
LOC110521089 | LOC106608211 | coding | downstream | 333191 | 35249617 ~ 35418424 (+) |
LOC110521090 | LOC106608213 | coding | downstream | 645562 | 35561988 ~ 35723593 (+) |
LOC110522555 | LOC106608214 | coding | downstream | 815666 | 35732092 ~ 35761259 (+) |
LOC110522558 | LOC106571671 | coding | downstream | 887522 | 35803948 ~ 35819308 (+) |
G346229 | NA | non-coding | upstream | 62409 | 34838866 ~ 34840441 (+) |
G346227 | NA | non-coding | upstream | 65840 | 34832451 ~ 34837010 (+) |
G346222 | NA | non-coding | upstream | 89192 | 34813416 ~ 34813658 (+) |
G346186 | 5nt1a | non-coding | upstream | 102101 | 34761873 ~ 34800749 (+) |
G346264 | NA | non-coding | downstream | 9297 | 34925723 ~ 34926041 (+) |
G346294 | NA | non-coding | downstream | 70969 | 34987395 ~ 34988003 (+) |
G346295 | NA | non-coding | downstream | 71716 | 34988142 ~ 34988828 (+) |
G346342 | NA | non-coding | downstream | 193528 | 35109954 ~ 35115330 (+) |
G346346 | NA | non-coding | downstream | 224561 | 35140987 ~ 35141198 (+) |
LOC110522536 | LOC105024319 | other | upstream | 510587 | 34390869 ~ 34394175 (+) |
LOC110522521 | NA | other | upstream | 1316539 | 33584945 ~ 33586386 (+) |
G344647 | NA | other | upstream | 1348847 | 33552127 ~ 33554003 (+) |
G346334 | NA | other | downstream | 157513 | 35073939 ~ 35074338 (+) |
G347151 | NA | other | downstream | 916943 | 35833369 ~ 35833844 (+) |
G347178 | NA | other | downstream | 991820 | 35908246 ~ 35908451 (+) |
LOC110522562 | LOC105017690 | other | downstream | 1122740 | 36039096 ~ 36123362 (+) |
G348133 | NA | other | downstream | 2243668 | 37160094 ~ 37161123 (+) |