LOC110522553 (LOC106608207)


Basic Information

Item Value
gene id LOC110522553
gene name LOC106608207
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34930250 ~ 34970463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976163.1
TGTTTTCAGTTCAGTTGTAACCGAGCTCTCTACGAGAGAATGATCTATTGTTGCACACTATCACGTGTCTGCGCATGACACCCTCGGAAAAGTTGCAGTTGGCAGAATCTGGCGAAGTGTTATCATAACAACCAAAAACTGTACAAGAAGACTACACCTGGAACGACGGAGTTAATGATTGTTTCATCATCTGCGGGTCTATTCTTCTGCACTAGGAAGTTAAGGGGAGGTGCCATACCGAGGCCATGGAATGATCCTGGAGAATGGACACGAGAAGCACGAACATTGGGGAAGGAGGCTCATGGGACATGAACCCGACAACGACAATGAGACCGAGTCGAAGAACTGCACAGAGCCAGCGATCAAGGAGTTCCCTGAAGACCTTTTCACCAACAACGAGCGCAAGAGTGGGGCCGTCCTGCTGCACATAGTGGCGGCCCTCTATATGTTCCTGGCCCTGGCTATAATCTGTGACGACTACTTTGTGACATCGCTGGAGAAGATCTGTGAGAAACTAGACCTAAGTGAGGATGTTGCCGGAGCCACTTTTATGGCAGCTGGGAGTTCTGCTCCAGAGCTGTTTGCCTCTGTCATTGgTGTCTTCATCACCCACGGTGACGTGGGGGTTGGGACAATCGTTGGCTCAGCCGTCTTTAATATCCTGTGCATCATCGGTGTGTGCGGAATCTTTGccggacaggtCGTAATGTTGGGTTGGTGGTCTGTTTTCCGAGATTCATTCTACTACATCTTGTCTATCCTAGCTCTTATTGCATTCATTTACGATGAGAAGGTGGTGTGGTGGGAGAGCCTGGTGTTGGTGCTCATGTACTGTGGATACATCCTCATCATGAAGTTTAACCAGAGCTTGCAGAAGTTGTTCACGGGGAAAGGGGGTAAAGACAAGAACCAGGCCAACGGTAACGCTGCGGCTAGCAGCGAGATGGAGGATGTTAAGCCCAGTAAGGCTTACAGTCGTGGCTCTGTGGTCATGGTCGATGAGATTATGCACGCCAGCCCTCCCAAGTTACGCTTCCCAGAGGCCGGCCTCCGCGTCATGGTCACCAGCCATTTTGGACCAAAGACCCGGCTGCGCATGGCCAGTCGCCTCATCATCACTGAGCGTCAGAAGCTAGTCCAGGGTGCCAACGGGGTGGAGACCCAGGTTCTGGAGGGGAAGGTGGACATTGAGAATGGCAACGTGCCTGAAGACAAACCagcagaggaggagcaggagaatgAAACCATCTCCCCCTTTCAtatccctgATGGCATCGGCAGCAAGTGCAAGTGGCTGATCTCGTGGCCCCTGCTGCTCCTCCTGTTCTTCACCATCCCCAACTGTGCGAAGCCTCGCTGGGAGAAGTTCTTCATGGTCTCCTTCTTCCTTTCTACCGTCTGGATCGCTGTCTTCTCCTACTTCATGGTCTGGATGGTCACCATCATCGGCTACACCCTTGGCATCCCAGATGTCATTATGGGCATCACCTTCCTGGCAGCCGGCACCAGCGTTCCAGACTGCATCGCCAGTCTCATTGTTGCTCGGCAAGGATTGGGTGACATGGCAGTGTCCAACACCATCGGCAGTAATGTGTTTGATATCCTGGTTGGGCTGGGCGTTCCTTGGGCACTACAGACCATGGCGGTCAACTATGGCTCCGAGGTCATGATCAACAGTCGAGGACTGGTCTACTCTGTGGTGTTGCTACTGGGATCTGTGGCTTTGACGGTGGGGGGGATTCATGTGAACCACTGGAAGCTGGATCTGAAGCTGGGTATCTACACGCTGGTCCTCTACGCGGTCTTCCTGTGTTTCTCCATCATGATCGAGTACAACGTGTTCACCTTCGTCAACCTGCCCATGTGCAtggaggagtagctggaccacaCCCACCTCAACCAGGAAGCTCCACTCCCTCAACCCCTAACGGCAACCAATCACAATCAACTTTCCCCATCCTCCACCACGTTACTAAACCTGGTTATCTCCTGTCTGACAGGTCACCTGTCATTTTCAGAACTGACCTGTTGACCTCTTGATCTGATCCTGGTCTTTAAATATTTTCTTTCCCTGTGCTTGGACTCACTTTCCCATGAGGCTTTGTTCTGAGGAGTGGACAGACGCATTAAACGAACTGGACCCATTTTCAGACTATTCCATTTTCCATTCCCCCATCCACACGATCTGTAGTCTGATTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGTCTGACTGGCTTTCCTTAGCCTTCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGTCTGACTGGCTTTCCTTAGCCTTCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGTTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTCCCTTAGCCTTCCCCTGCAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCGTAGCCTTCCCCCACAGGCCCTAGAATCAAC
>XM_036976162.1
TGACTTTGCTTCACGAATGTAACAATTAGGCGAACCTTGATGAAATCAGATTGGTTGCAATTAATATGCGGCGGCAGAACGCAGTTGGTGCGTGTAGCCTAGTTCTGCAGCCACATCCAGTTTAATCGTTTCATTGAAGAGGATGATTTAAATTGATATTCAGTAGTAGATTTTGTGCTAATTTGAAGGCAACCAGTGATATTCGTTTCAAATGAAATGGAAGTTTATTTGCTAAAATTTAAAGGGCAGAATCTGGGATTTGCGAGGGAATGCTGAATTGATTGGAGACCATCGGAATTGCCAGCCCTGTgtcattcattacctgttgtgcaGGCACGGAATTTTCACGCGCTGTTCTAGCAATCAAACAGCTGAACAGCCTTGTCTCGGCAGCACATGCAAACCGTCCGCTCCACCACTTCCCATCTGCGCTCCGGGCACTTCAAATGAGGACCGCGTCCCGAGCCTATTCTATGTGAAGCTGCGAAAACGGGCAATTCCTTCGGTCTCTCCCGTCTGCAGTGAGGCAAGGACGAAAAGTCACGGTTTGGCGGAGCTGCAGCCATGGACCAGGACGAGAACAAGAGCGTCTCGAAAAAGACCATAATCGCAAAGATTTTCAAAGTTcgcaagaggagagagatgctTTTCGTGCAAGTGTGTTTTCTCTGCAGTGTCCTCTTCATGGCGTGGAGCATGTCAGCACTTCTGACAAAGACAGGCCATGGAATGATCCTGGAGAATGGACACGAGAAGCACGAACATTGGGGAAGGAGGCTCATGGGACATGAACCCGACAACGACAATGAGACCGAGTCGAAGAACTGCACAGAGCCAGCGATCAAGGAGTTCCCTGAAGACCTTTTCACCAACAACGAGCGCAAGAGTGGGGCCGTCCTGCTGCACATAGTGGCGGCCCTCTATATGTTCCTGGCCCTGGCTATAATCTGTGACGACTACTTTGTGACATCGCTGGAGAAGATCTGTGAGAAACTAGACCTAAGTGAGGATGTTGCCGGAGCCACTTTTATGGCAGCTGGGAGTTCTGCTCCAGAGCTGTTTGCCTCTGTCATTGgTGTCTTCATCACCCACGGTGACGTGGGGGTTGGGACAATCGTTGGCTCAGCCGTCTTTAATATCCTGTGCATCATCGGTGTGTGCGGAATCTTTGccggacaggtCGTAATGTTGGGTTGGTGGTCTGTTTTCCGAGATTCATTCTACTACATCTTGTCTATCCTAGCTCTTATTGCATTCATTTACGATGAGAAGGTGGTGTGGTGGGAGAGCCTGGTGTTGGTGCTCATGTACTGTGGATACATCCTCATCATGAAGTTTAACCAGAGCTTGCAGAAGTTGTTCACGGGGAAAGGGGGTAAAGACAAGAACCAGGCCAACGGTAACGCTGCGGCTAGCAGCGAGATGGAGGATGTTAAGCCCAGTAAGGCTTACAGTCGTGGCTCTGTGGTCATGGTCGATGAGATTATGCACGCCAGCCCTCCCAAGTTACGCTTCCCAGAGGCCGGCCTCCGCGTCATGGTCACCAGCCATTTTGGACCAAAGACCCGGCTGCGCATGGCCAGTCGCCTCATCATCACTGAGCGTCAGAAGCTAGTCCAGGGTGCCAACGGGGTGGAGACCCAGGTTCTGGAGGGGAAGGTGGACATTGAGAATGGCAACGTGCCTGAAGACAAACCagcagaggaggagcaggagaatgAAACCATCTCCCCCTTTCAtatccctgATGGCATCGGCAGCAAGTGCAAGTGGCTGATCTCGTGGCCCCTGCTGCTCCTCCTGTTCTTCACCATCCCCAACTGTGCGAAGCCTCGCTGGGAGAAGTTCTTCATGGTCTCCTTCTTCCTTTCTACCGTCTGGATCGCTGTCTTCTCCTACTTCATGGTCTGGATGGTCACCATCATCGGCTACACCCTTGGCATCCCAGATGTCATTATGGGCATCACCTTCCTGGCAGCCGGCACCAGCGTTCCAGACTGCATCGCCAGTCTCATTGTTGCTCGGCAAGGATTGGGTGACATGGCAGTGTCCAACACCATCGGCAGTAATGTGTTTGATATCCTGGTTGGGCTGGGCGTTCCTTGGGCACTACAGACCATGGCGGTCAACTATGGCTCCGAGGTCATGATCAACAGTCGAGGACTGGTCTACTCTGTGGTGTTGCTACTGGGATCTGTGGCTTTGACGGTGGGGGGGATTCATGTGAACCACTGGAAGCTGGATCTGAAGCTGGGTATCTACACGCTGGTCCTCTACGCGGTCTTCCTGTGTTTCTCCATCATGATCGAGTACAACGTGTTCACCTTCGTCAACCTGCCCATGTGCAtggaggagtagctggaccacaCCCACCTCAACCAGGAAGCTCCACTCCCTCAACCCCTAACGGCAACCAATCACAATCAACTTTCCCCATCCTCCACCACGTTACTAAACCTGGTTATCTCCTGTCTGACAGGTCACCTGTCATTTTCAGAACTGACCTGTTGACCTCTTGATCTGATCCTGGTCTTTAAATATTTTCTTTCCCTGTGCTTGGACTCACTTTCCCATGAGGCTTTGTTCTGAGGAGTGGACAGACGCATTAAACGAACTGGACCCATTTTCAGACTATTCCATTTTCCATTCCCCCATCCACACGATCTGTAGTCTGATTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGTCTGACTGGCTTTCCTTAGCCTTCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGTCTGACTGGCTTTCCTTAGCCTTCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGTTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTCCCTTAGCCTTCCCCTGCAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCTTAGCCTTCCCCCACAGGCCCTAGAATCAACCCTACAGTAGTCTGACTGGCTTTCCGTAGCCTTCCCCCACAGGCCCTAGAATCAAC

Function

NR:

description
sodium/potassium/calcium exchanger 4-like

GO: NA

KEGG:

id description
K13752 SLC24A4, NCKX4; solute carrier family 24 (sodium/potassium/calcium exchanger), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976163.1 False 2915 mRNA 0.52 17 34930250 34970463
XM_036976162.1 True 3394 mRNA 0.52 17 34930498 34970463

Neighbor

gene id symbol gene type direction distance location
LOC110521087 LOC106608196 coding upstream 13824 34902850 ~ 34916426 (+)
LOC110522552 LOC106608197 coding upstream 29333 34893129 ~ 34900917 (+)
LOC110522546 LOC106608201 coding upstream 98969 34807607 ~ 34831281 (+)
rdh14b rdh14 coding upstream 300249 34627365 ~ 34630001 (+)
LOC110522544 LOC106571654 coding upstream 303059 34619900 ~ 34627191 (+)
LOC110521089 LOC106608211 coding downstream 279154 35249617 ~ 35418424 (+)
LOC110521090 LOC106608213 coding downstream 591525 35561988 ~ 35723593 (+)
LOC110522555 LOC106608214 coding downstream 761629 35732092 ~ 35761259 (+)
LOC110522558 LOC106571671 coding downstream 833485 35803948 ~ 35819308 (+)
LOC118964470 NA coding downstream 912705 35883168 ~ 35884241 (+)
G346264 NA non-coding upstream 4209 34925723 ~ 34926041 (+)
G346229 NA non-coding upstream 89809 34838866 ~ 34840441 (+)
G346227 NA non-coding upstream 93240 34832451 ~ 34837010 (+)
G346222 NA non-coding upstream 116592 34813416 ~ 34813658 (+)
G346186 5nt1a non-coding upstream 129501 34761873 ~ 34800749 (+)
G346294 NA non-coding downstream 16932 34987395 ~ 34988003 (+)
G346295 NA non-coding downstream 17679 34988142 ~ 34988828 (+)
G346342 NA non-coding downstream 139491 35109954 ~ 35115330 (+)
G346346 NA non-coding downstream 170524 35140987 ~ 35141198 (+)
G346350 NA non-coding downstream 192071 35162534 ~ 35163109 (+)
LOC110522530 LOC106608164 other upstream 390790 34536950 ~ 34541410 (+)
LOC110522536 LOC105024319 other upstream 537987 34390869 ~ 34394175 (+)
LOC110522521 NA other upstream 1343939 33584945 ~ 33586386 (+)
G344647 NA other upstream 1376247 33552127 ~ 33554003 (+)
G346334 NA other downstream 103476 35073939 ~ 35074338 (+)
G347151 NA other downstream 862906 35833369 ~ 35833844 (+)
G347178 NA other downstream 937783 35908246 ~ 35908451 (+)
LOC110522562 LOC105017690 other downstream 1068703 36039096 ~ 36123362 (+)
G348133 NA other downstream 2189631 37160094 ~ 37161123 (+)

Expression


Co-expression Network