Item | Value |
---|---|
gene id | LOC110522558 |
gene name | LOC106571671 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048568.1 |
NCBI id | CM023222.3 |
chromosome length | 46841314 |
location | 35803948 ~ 35819308 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: breast cancer metastasis-suppressor 1-like protein-A isoform X4 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036976187.1 | False | 2989 | mRNA | 0.46 | 11 | 35803948 | 35819308 |
XM_036976188.1 | False | 2862 | mRNA | 0.46 | 10 | 35803948 | 35819308 |
XM_036976191.1 | False | 1489 | mRNA | 0.45 | 7 | 35803950 | 35810800 |
XM_036976189.1 | False | 2978 | mRNA | 0.46 | 11 | 35803950 | 35819308 |
XM_036976190.1 | False | 2851 | mRNA | 0.46 | 10 | 35803950 | 35819308 |
XM_021601014.2 | False | 2808 | mRNA | 0.46 | 9 | 35803952 | 35819308 |
XM_021601012.2 | False | 2934 | mRNA | 0.46 | 10 | 35803953 | 35819308 |
XM_021601015.2 | False | 2797 | mRNA | 0.46 | 9 | 35803954 | 35819308 |
XM_021601013.2 | True | 2923 | mRNA | 0.46 | 10 | 35803955 | 35819308 |
35,792,000
35,794,000
35,796,000
35,798,000
35,800,000
35,802,000
35,804,000
35,806,000
35,808,000
35,810,000
35,810,000
35,812,000
35,814,000
35,816,000
35,818,000
35,820,000
35,822,000
35,824,000
35,826,000
NC_048568.1
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110522555 | LOC106608214 | coding | upstream | 42689 | 35732092 ~ 35761259 (+) |
LOC110521090 | LOC106608213 | coding | upstream | 80355 | 35561988 ~ 35723593 (+) |
LOC110521089 | LOC106608211 | coding | upstream | 385524 | 35249617 ~ 35418424 (+) |
LOC110522553 | LOC106608207 | coding | upstream | 833485 | 34930250 ~ 34970463 (+) |
LOC110521087 | LOC106608196 | coding | upstream | 887522 | 34902850 ~ 34916426 (+) |
LOC118964470 | NA | coding | downstream | 63860 | 35883168 ~ 35884241 (+) |
LOC110522562 | LOC105017690 | coding | downstream | 219788 | 36039096 ~ 36123362 (+) |
LOC110522563 | LOC106608227 | coding | downstream | 319648 | 36138956 ~ 36158325 (+) |
LOC110522575 | NA | coding | downstream | 1219247 | 37038555 ~ 37040052 (+) |
snw1 | LOC106608236 | coding | downstream | 1333716 | 37153024 ~ 37167042 (+) |
G347141 | NA | non-coding | upstream | 1888 | 35801817 ~ 35802060 (+) |
G347142 | NA | non-coding | upstream | 3704 | 35797261 ~ 35800244 (+) |
G347128 | NA | non-coding | upstream | 23228 | 35780374 ~ 35780720 (+) |
G347104 | NA | non-coding | upstream | 87950 | 35715107 ~ 35715998 (+) |
G347103 | NA | non-coding | upstream | 89228 | 35714243 ~ 35714720 (+) |
G347153 | NA | non-coding | downstream | 20082 | 35839390 ~ 35839665 (+) |
G347155 | NA | non-coding | downstream | 22649 | 35841957 ~ 35842279 (+) |
G347173 | NA | non-coding | downstream | 81793 | 35901101 ~ 35901315 (+) |
G347177 | NA | non-coding | downstream | 88381 | 35907689 ~ 35907940 (+) |
G346334 | NA | other | upstream | 729610 | 35073939 ~ 35074338 (+) |
LOC110522546 | LOC106608201 | other | upstream | 981766 | 34807607 ~ 34831281 (+) |
LOC110522530 | LOC106608164 | other | upstream | 1264488 | 34536950 ~ 34541410 (+) |
LOC110522536 | LOC105024319 | other | upstream | 1411685 | 34390869 ~ 34394175 (+) |
LOC110522521 | NA | other | upstream | 2217637 | 33584945 ~ 33586386 (+) |
G347151 | NA | other | downstream | 14061 | 35833369 ~ 35833844 (+) |
G347178 | NA | other | downstream | 88938 | 35908246 ~ 35908451 (+) |
G348133 | NA | other | downstream | 1340786 | 37160094 ~ 37161123 (+) |
LOC110522576 | LOC106608246 | other | downstream | 1626159 | 37445368 ~ 37501952 (+) |