Gene
RNA
| Item | Value |
|---|---|
| gene id | actc1a |
| gene name | LOC105024319 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 37870752 ~ 37878518 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: actin, alpha cardiac isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0036302 | atrioventricular canal development | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0003272 | endocardial cushion formation | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| id | description |
|---|---|
| K12314 | ACTC1; actin, alpha cardiac muscle |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036976220.1 | False | 1601 | mRNA | 0.54 | 8 | 37870752 | 37878518 |
| XM_036976221.1 | True | 1307 | mRNA | 0.55 | 8 | 37872264 | 37878518 |
37,868,000
37,869,000
37,870,000
37,871,000
37,872,000
37,873,000
37,874,000
37,875,000
37,876,000
37,877,000
37,878,000
37,878,000
37,879,000
37,880,000
37,881,000
37,882,000
37,883,000
37,884,000
37,885,000
37,886,000
37,887,000
37,888,000
NC_048568.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118964471 | NA | coding | upstream | 15723 | 37847979 ~ 37855029 (+) |
| LOC110522574 | LOC106608248 | coding | upstream | 346684 | 37522809 ~ 37524068 (+) |
| LOC110522576 | LOC106608246 | coding | upstream | 368800 | 37445368 ~ 37501952 (+) |
| LOC110522568 | LOC106571107 | coding | upstream | 468729 | 37284261 ~ 37402023 (+) |
| LOC110522567 | LOC106608238 | coding | upstream | 587270 | 37271173 ~ 37283482 (+) |
| LOC110521098 | LOC106608260 | coding | downstream | 884 | 37879402 ~ 37897524 (+) |
| LOC110522584 | LOC106608258 | coding | downstream | 19118 | 37897636 ~ 37899208 (+) |
| LOC110521100 | LOC106608253 | coding | downstream | 91204 | 37969722 ~ 38234678 (+) |
| LOC110522580 | LOC106608254 | coding | downstream | 409679 | 38288197 ~ 38291538 (+) |
| thbs1b | LOC106608163 | coding | downstream | 747698 | 38626216 ~ 38651062 (+) |
| G349315 | NA | non-coding | upstream | 20175 | 37850301 ~ 37850577 (+) |
| G349275 | NA | non-coding | upstream | 49317 | 37775498 ~ 37821435 (+) |
| G349296 | NA | non-coding | upstream | 57036 | 37813187 ~ 37813716 (+) |
| G349286 | NA | non-coding | upstream | 77177 | 37792057 ~ 37793575 (+) |
| G349263 | NA | non-coding | upstream | 106457 | 37763843 ~ 37764295 (+) |
| G349367 | NA | non-coding | downstream | 75724 | 37954242 ~ 37955404 (+) |
| G349404 | NA | non-coding | downstream | 141325 | 38019843 ~ 38020608 (+) |
| G349405 | NA | non-coding | downstream | 144583 | 38023101 ~ 38023738 (+) |
| G349416 | NA | non-coding | downstream | 170212 | 38048730 ~ 38049008 (+) |
| G349417 | NA | non-coding | downstream | 171839 | 38050357 ~ 38051159 (+) |
| G348133 | NA | other | upstream | 709629 | 37160094 ~ 37161123 (+) |
| LOC110522562 | LOC105017690 | other | upstream | 1797796 | 36039096 ~ 36123362 (+) |
| G347178 | NA | other | upstream | 1962301 | 35908246 ~ 35908451 (+) |
| G347151 | NA | other | upstream | 2036908 | 35833369 ~ 35833844 (+) |
| G349855 | NA | other | downstream | 526127 | 38404645 ~ 38405464 (+) |
| G349877 | NA | other | downstream | 553661 | 38432179 ~ 38434024 (+) |
| LOC110522591 | LOC105024333 | other | downstream | 1011865 | 38890314 ~ 38897681 (+) |
| G350211 | NA | other | downstream | 1025212 | 38903730 ~ 38904774 (+) |
| G350665 | NA | other | downstream | 1509623 | 39388141 ~ 39389474 (+) |
