LOC110521098 (LOC106608260)


Basic Information

Item Value
gene id LOC110521098
gene name LOC106608260
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37879402 ~ 37897524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976480.1
TGCCACAGGTGATAATGATGCCAATAATTGCACACTAGGAACAACAAGTGACTTTTCAGAGTCATCAGCAATTGTACTCTTAAAATAGTTTACCTGGAAGAAACTACTAAATAACATTTAGGACTACTCTGCTTCTACGGTTTATTTTTTCACCTGTAAAAAGAGTGACGGAAAGATGAAGATTTCAGAAAGGCCCAGTGACACGGTCCGTCTCTCTGTATTGGAACATCTCCGTGTGGTTCACGGGATAAAGCTGAAGAGCTGtggaaggaagaaagagagaaggtttACAGGTGGTACCAAAGTGTTCGGCGTTCCACTGGAGAGTTTGCCGTTGTGTTACATGCCTCCGTGTGGGCTGCTACCCTGCTTTCTAGTGGATGCCTGTGAGCATCTACTGGAACATGCTGGGACTGATGGCCTTTTCAGAAAATCTGGCTCTGTTGTTCGTCTGAGGACCCTTAGGGCCAAACTAGACCATGGGGAGGCCTGTCTATCCACAGCCCTCCCCTGTGACGTGGCCAGCCTTTTGAAGCTGTTCTGTCGTGAGCTTCCAGACCCCCTGTTCCCCTCAGACCTCCATTCAGCCCTGCTGAAGGCCCAGCTATTACCCACGTTGGAGGAGAGGGCCTTGGCCACCCAGCTGCTGTCCTGCCTACTGCCTGACAGGAACTTTGCCTTCCTCAGTTACTTCTTCCACTTCCTCTCAAAGGTCTCCCACAGGTGTGCAGAGAACCGGATGACCAATAGTAACCTGGCTGTGATCTTTGCCCCGAGCCTGCTTCCCCCCAGCCACGGAACAGAGGGGATGGACACGCATATGAAACTCAAGGCTGTGGTCTATACCTTCATAGAGAATGTCCATTCATTTGGTGTGGTTCCTCGGGTGATCATGGAGGGCATCCCAGGTCATGCTGAGATGTCTCCCTGCAGGAAGAGACGGCCACTCAGAAAGAGCCTGGGTTTGGAGACCTTCCCAGACATTCAGCTTTTCaggagcaaaacattttgctCAGAGAAACCAGGCTCAAGTCCTTCAGCTCGGTTGGCTAGATCTCCCTCCACCCCAGTGAGGACAGAGAGCTGTAGACTACAGAGCAAAACACTCAAAAGAATAGATTCGGGAAACGTTGGGTGTTTTTCAGCCAAAAGGCTGAAGGGAGGTGATGGTATCCGCAGGTATCGTGGTCGGTCTGGTCTGGGAAAGCTGAACCTAAGCCCCTGGAAGAGCAGGCGACGCACCACTCTATACATTACAGGCTCCTGCTCCTCGCATCCAGGATACACGCTGACACCAGAGATGGCTTCGGCAGTCAGGTTGAGTAGATCAGTGCTTCTGATTGTTCTGGTGTGTATAGCGGGGCTGGCATCGGCCCGGAGCCCCCGCACAGCGGACCAGGTATCTGAGGCCGACATTCAGCGTCTCCTACACGGAGTCATGGAGCAGCTGGGCATCGCTCGGCCCAGGGTCGAGTACCCTGCTCACCAGGCCACCAACATCGTGGGGCCACAGAGCATCCAAGGTGGAGCTCATGAGGGACTGCAGCACCTGGGGCCCTATGGAAACATCCCCAACATCGTAGCTGAGCTGACAGGGGACAACATCCCTAAAGACTTCAGTGAGGACCATGGATACCCCGACCCTCCTAACCCATGTCCAGTGGGAAAGACAGCTGCAGATGGGTGTCTGGAAAACGCCCCGGACACAGCAGAGTTCAGCAGAGAGTTCCAGAAACATCAGCACCTGTTCGACCCCGAGCATGACTACCCTGCTCTGGCTAAGTGGAACAAGGAGCTGTTGTACCAGAAACTGAAGGGAGGAGCCAAAAGAAGAAAAAGGAGTGTCAATAACCCCTACCTGATGGGTCAGAGGCTGAACAATGTGGTGGCCAAGAAGTCTGTTCCCCACTACCCAGAAGAGGACGAAGACTATCACACCACCACTGCAACAAAAACCAGCACCTAAAACACACTGTAGTTTTAACATTACTGGCCGCCATGTTCACTTCACATTATCTCAAGTAGATTTAAGCAATAAGGTCCGAgggggtgtgatatatggccaatataccacggctaagggctgttctttcgCACGACACAACGTGGAGTGCctagatacagcccttagccgtggtatattggccatataccacaaatcccccgacgtgccttattgctattataaactggttaccaacataattggagcagtaaaaatacccgtgttatacggtctgatataccacggcgtcagccaatcagcattcagggctccaaCCACCTAGTTTATAATAAAACGTCACATCAGACAAGtatgttctctaaatgtgttcctTTTTCACCATCACACATCTTTGTTGACCTACGTAGCCTACTAACAATGTTAGGTATAGTAACACAGAGGTTTATTGATATGTACCAATTGTGTAAAAAAATAAGATATTACCATCTGTTATCTTTTTTTCAATCTATCAAAATGACTGTTGCTCAGGGTGGAAAATGTAACAAGCTTATGAGTTATTTTGTGCCTGTGGTCCACTGTGGCATGCAATTCAGTAATATTAGAACAGCCTATGAAGCTGAATGTTGTCTCAATTATATATTTGATCAAACCAAAAATATGCTGTTTGTGATACAAAATATTTAATCAAGTTGTTGTGATTtagcttttttaaatgtattttggctCAAGCCATTATCTAACTCTCTTGCTGTTTTTTTGATGAACATTTGCTGTTAATtcttaataatataaaataaatgatttacTCTGCAAGTT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0030141 secretory granule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976480.1 True 2782 mRNA 0.48 14 37879402 37897524

Neighbor

gene id symbol gene type direction distance location
actc1a LOC105024319 coding upstream 884 37870752 ~ 37878518 (+)
LOC118964471 NA coding upstream 24373 37847979 ~ 37855029 (+)
LOC110522574 LOC106608248 coding upstream 355334 37522809 ~ 37524068 (+)
LOC110522576 LOC106608246 coding upstream 377450 37445368 ~ 37501952 (+)
LOC110522568 LOC106571107 coding upstream 477379 37284261 ~ 37402023 (+)
LOC110522584 LOC106608258 coding downstream 112 37897636 ~ 37899208 (+)
LOC110521100 LOC106608253 coding downstream 72198 37969722 ~ 38234678 (+)
LOC110522580 LOC106608254 coding downstream 390673 38288197 ~ 38291538 (+)
thbs1b LOC106608163 coding downstream 728692 38626216 ~ 38651062 (+)
LOC110522590 NA coding downstream 920376 38817900 ~ 38820524 (+)
G349315 NA non-coding upstream 28825 37850301 ~ 37850577 (+)
G349275 NA non-coding upstream 57967 37775498 ~ 37821435 (+)
G349296 NA non-coding upstream 65686 37813187 ~ 37813716 (+)
G349286 NA non-coding upstream 85827 37792057 ~ 37793575 (+)
G349263 NA non-coding upstream 115107 37763843 ~ 37764295 (+)
G349367 NA non-coding downstream 56718 37954242 ~ 37955404 (+)
G349404 NA non-coding downstream 122319 38019843 ~ 38020608 (+)
G349405 NA non-coding downstream 125577 38023101 ~ 38023738 (+)
G349416 NA non-coding downstream 151206 38048730 ~ 38049008 (+)
G349417 NA non-coding downstream 152833 38050357 ~ 38051159 (+)
G348133 NA other upstream 718279 37160094 ~ 37161123 (+)
LOC110522562 LOC105017690 other upstream 1806446 36039096 ~ 36123362 (+)
G347178 NA other upstream 1970951 35908246 ~ 35908451 (+)
G347151 NA other upstream 2045558 35833369 ~ 35833844 (+)
G349855 NA other downstream 507121 38404645 ~ 38405464 (+)
G349877 NA other downstream 534655 38432179 ~ 38434024 (+)
LOC110522591 LOC105024333 other downstream 992859 38890314 ~ 38897681 (+)
G350211 NA other downstream 1006206 38903730 ~ 38904774 (+)
G350665 NA other downstream 1490617 39388141 ~ 39389474 (+)

Expression


Co-expression Network