LOC110522580 (LOC106608254)


Basic Information

Item Value
gene id LOC110522580
gene name LOC106608254
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38288197 ~ 38291538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976225.1
CCACAGTAAATAATAATGGAGCCACAAAGACACAATTCCATACCTATCTCCTCACTGTAACATAGCGAGACAGCCACTAAACCAACAAAATGGATGTTGAGGACCTCCAGATCCAAAACTCAACATTTGATGGCAACACATCAGACATTCAGCCTGTCCCACACAACCTATGGGAGGTCATCACCATAGCGACCATATCGGCCATCGTCAGCCTTATAACAGTCGTAGGCAATGTTCTGGTGATGCTGTCGTTCAAGGTCAACAGTCAACTAAAGACAGTCAACAACTACTACCTTCTCAGCTTAGCCTTCGCTGACCTCATAATAGGAGCCCTGTCCATGAACTTATACACCTCATACATCCTAATGGGCTATTGGTCCTTAGGGAACCTAgcctgtgacctctggttagcCCTGGATTATGTGGCCAGCAATGCCTCCGTTATGAACTTGTTAGTCATCAGTTTCGACAGATACTTCTCCATCACAAGGCCGCTGACCTATAGAGCCAAGAGGACGCCGAAGAGAGCGGCTATTATGATTGGCTTAGCGTGGTTGGTGTCGTTTGTCCTCTGGGCGCCGCCTATCCTGTGCTGGCAGTACTTTGCGGGAGAGAGGACGGTCCCGGCAGACCAGTGCCAGATCCAGTTCTTCTCCGAGCCGGTGATCACGTTTGGCACGGCCATCGCAGCGTTCTACATCCCTGTCTCCATCATGACCCTCCTCTACAGTAGGATCTACAAGGAGACAGAGAAACGCACCAAGGACCTGGCTGAGCTGCAGGGTCTTACCACATCTGGTCACCCAGAGACTGTTAATAAACCCCAGAAAACAGTTATGTTACAGTCCTGTTTTGGCTCCAGTAAcgacaggagggacaggaggaacCAGGCCTCATGGTCCTCGTCCAACCAGAGCAACGTCACCAAGACCACGACCCGGTCGGACGAGCTGGCCTGGGCCCATGCTGACCAGATCACCTCCTTTAACAGCTACACCTCGTCCGAGGAGGAGGAGACTCACCATCCTGTTTCCGCGGCAACCTCTCAGGGGACAATCAAAGGTCAAGTTCAAAGTCAGACAGAGAAAGGACAGACGGCCGCCGATTACGGTGATAACGAAGAAGGCGAGTATTTCCAGACCGCCACTCCACCGCTGAAAAAACTCAGCAAGAAGGGAATCTCTTACAAGTTCAAATTGGTCTCGAAAGATACCAGCAGCCCTCCTCAGAATGACAAAATCACCAACAACACAGACCTCAAAACAGCTCCTCCATGTCCCTCTGAGTCTGACCAGATAGGTCAGAACCACCACCAGAACTCCTCTCCATcatcccacaccaccaccaccacccccaagcCCATGGACCCCTCCCTGAAGAGCCAGATCACCAAGAGGAAGAGGATGGTCCTCATCAAGGAGAAGAAAGCTGCTCAGACCCTCAGTGCCATCCTCCTGGCCTTCATCCTAACATGGACGCCGTACAACATCATGGTGCTCATCTCCACCTTCTGTTCTGACTGTatccctgtgtctctctggcACCTGGGCTACTGGCTCTGCTATGTCAACAGCACCATCAACCCCATGTGTTACGCGTTGTGTAATAAGACTTTTCAGAAGACCTTTAAGATGCTGTTGATGTGTCagtggaggaagaagagaggggaggataagTTGTACTGGTGCGGACAGAACCCGGCCATCAACAGCAAGATGACATGATGTAGTGTGGAATAGAGAATATATACGTATTTGGACATTCAGCAGCAGCAGACCCTTTTATCTAAAATAACTTTTTGTACAGCAGATATGTTTAGCAAATGTGGCCCATATGGCATTAAacccacaacaacaaaaacaaaatgtgcactcTGAGGCAGAACTGAGTTTGGGAAAGCGTGATGTACATATTGAATATGCACATTGCTGCACATTGCTGCAACTGCAACTGTACTGTACGGATAGCAATGGAAGTGTGCTAGCTCAAATCACAGTAACTAGTGGTCATAGATATATCTGTGAGGATGAGTAATGCTGTATACTGTTGCACTATCACACACCTCTTCATGTCAAATGTTTCCTATATAAGCTAATGTGCCTTTGTTCGTCAGAAGGTCTGGTGATGAAGACTTGTAATTGTGAATGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGGTCGGTGTTGACCTTGTTACTGTATTGTGAATGGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGATCGGTGTTGACCTTGTTACTGTATTGTGAATGGGTCGGTGTTGACCTTGTTACTGTATTGTGAATGGGTCGGTGTTGACCTTGCTACTGTATTGTGAATGGATCGGTGTTGACCTCGTTACTGTATTGTGAATGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGGATCGGTGTTGACCTTGCTTTTTTGTGAATGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGATTGGTGTTGACCTTGCTACTGTATTGTGAATGGATCGGTGTTGACCTCGTTACTGTATTGTGAATGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGGATCGGTGTTGACCTTGCTTTTTTGTGAATGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGATCGGTGTTGACCTCGTTACTGTATTGTGAATGGATCGGTGTTGACCTTGCTACTGTATTGCAAATGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGATCGGTGTTGACCTTGCTACTGTATTGTGAATGGATCAGTGTTGACCTTGCTACTGTATTGTGTGCTGCTTGTGTACCTTTGATCTGATCAGTGAAATAATCCCAATTGAAAAGTATCATGAGAGATCCTCTGAATGCTCTTTTGTTAACACAACCTTTATATTACAACTGCTTCGGGGATGTGCACCAGACCACCAGGACACCCACCTAGGGGACAGTGATCTGAGTGACTAGGGACACCCACCTAGCGGACAGTGATCCGAGGTGACCAGGGACACCGATCTGACTGAGTGACCATGGACACCCACCTAGGGGACAGTGATCTGGCAGTGACAGTGATTTGAGGTGACCAGGGACACCCACCTAAGGTGACTCATATGGCTTATGGGTCTCTGGGCTACAGTAGCTAACCCATCACGACTGTTCGGTTTCTGGATCACATCAACATGACCTCTCCTGTTAATTACATTACATGAATTACTCTCCTGTTAATTACATTACATGAATTACATTTCAAACACTGCATATGTGCCAGGAGTGTTACAGAGAAC

Function

NR:

description
muscarinic acetylcholine receptor M5-like

GO:

id name namespace
GO:0007213 G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001696 gastric acid secretion biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016907 G protein-coupled acetylcholine receptor activity molecular_function

KEGG:

id description
K04131 CHRM3; muscarinic acetylcholine receptor M3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976225.1 True 3342 mRNA 0.48 1 38288197 38291538

Neighbor

gene id symbol gene type direction distance location
LOC110521100 LOC106608253 coding upstream 53519 37969722 ~ 38234678 (+)
LOC110522584 LOC106608258 coding upstream 388989 37897636 ~ 37899208 (+)
LOC110521098 LOC106608260 coding upstream 390673 37879402 ~ 37897524 (+)
actc1a LOC105024319 coding upstream 409679 37870752 ~ 37878518 (+)
LOC118964471 NA coding upstream 433168 37847979 ~ 37855029 (+)
thbs1b LOC106608163 coding downstream 334678 38626216 ~ 38651062 (+)
LOC110522590 NA coding downstream 526362 38817900 ~ 38820524 (+)
LOC118964474 LOC106608159 coding downstream 534245 38825783 ~ 38885772 (+)
LOC110522591 LOC105024333 coding downstream 598776 38890314 ~ 38897681 (+)
LOC118964476 NA coding downstream 607866 38898435 ~ 38900534 (+)
G349497 NA non-coding upstream 9718 38277459 ~ 38278479 (+)
G349456 NA non-coding upstream 111871 38175489 ~ 38176326 (+)
G349446 NA non-coding upstream 144924 38142289 ~ 38143273 (+)
G349440 NA non-coding upstream 165766 38121386 ~ 38122431 (+)
G349418 NA non-coding upstream 235113 38052576 ~ 38053084 (+)
G349528 NA non-coding downstream 61158 38352696 ~ 38362145 (+)
G349529 NA non-coding downstream 61886 38353424 ~ 38355731 (+)
G349530 NA non-coding downstream 62779 38354317 ~ 38361596 (+)
G349531 NA non-coding downstream 63330 38354868 ~ 38363027 (+)
G349533 NA non-coding downstream 71831 38363369 ~ 38364394 (+)
LOC110522576 LOC106608246 other upstream 791191 37445368 ~ 37501952 (+)
G348133 NA other upstream 1127074 37160094 ~ 37161123 (+)
LOC110522562 LOC105017690 other upstream 2215241 36039096 ~ 36123362 (+)
G347178 NA other upstream 2379746 35908246 ~ 35908451 (+)
G347151 NA other upstream 2454353 35833369 ~ 35833844 (+)
G349855 NA other downstream 113107 38404645 ~ 38405464 (+)
G349877 NA other downstream 140641 38432179 ~ 38434024 (+)
G350211 NA other downstream 612192 38903730 ~ 38904774 (+)
G350665 NA other downstream 1096603 39388141 ~ 39389474 (+)

Expression


Co-expression Network