LOC118964474 (LOC106608159)


Basic Information

Item Value
gene id LOC118964474
gene name LOC106608159
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38825783 ~ 38885772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051532.1
GGGCTAACAAAATTGGTCTGGTCCCAATGATTTTCAGTAGACCTGCTGGCCTGGGCTTCACCGAGTAAAAACAATTACTGTGGTACATTAGTTATAACGGATAAAGTCAATTTGACGCTTAATACATTAATGCCCGTCTTCATTCTACAGTAGCATAATAAAGATATCCTGACCACAGTCTTCTACTACCCAAGGAAACCGTGCACGAAAGCGAGGCTGCTGACGTGTTTCCGCTTCCCCTCTTCTCGCAGTGAAAGAAACGGTCTGGCTGTTTGTGACGAAGCGGAAGAAGCGACAACACCGCAGGAAAAGACTATTCGTGATTAAATAACAAATCAATTGGAGGATAGTCTGTCTGGCTATTTGAGTCCATGACCAGACAGTGAGAACGGAGAGGAGGGCTTGAAGGTAGCCTTTACGTTGGTTAAGGCTTAGAGGACTGTAGAGTTTCCAGGGGAAAAGATGAGTGATGGAATGGTATTGTGTGAGACGAGAGCCctggcctcctcttcctctctagtcCACAGGCTGGCTACATCTGcaatcctcttcctcctcctctccctgctcccccaCGGACACGCATCAGGATGCCCTCAGCCTCTGGCTGTACAGCATGGGGAGCTGGTGAACCAGACGGAGGCGAACCGAGGCTCCTTCCCTCCTGGTACCCTGCTGTCCTATGGCTGTGAGCCGGGCTACGCCCCCGATGGACCCACCACCATCACCTGTACCACCGCTGGGACATGGTCCCGCCTGCCTCTACGCTGCATCAGCACTAATGtgTGCCCCCCTCCCACGGAGCCAGAGAACGGAGGGTACAGGTGCCACCCGTCCCCCTGCCACCGCCTCACCCAGAAGACCGTGATAGAGTACTTCTGTGACGAGGGCTACGCTCTGAAGGGGGACTACAAGTTCCTCACCTGTCAGAATGGGGAGTGGGACGCACCCATGCAGATCACCTGCCGCCTCAGCCCAGatAAGGAGCTGCGGTCTCCGTTGGCGATGCCAGCGCTGTCCATCGTAGCGTCCACAGCCTCCTCTGTGgccctcctgctgctgctggtggtgcTGTTTGTTCTGCTGCAGCCCAAACTCAAGTCCTTCCACCACagcaggcgtgAGCAGGGTGTGTCAGGCCAGCCAGCCTCCATGGTGGTGGAGGGGCTCCAGGTGGCCCTCCCCTCCTATGAGGAGGCGGTTTACGGTAGCGGAGGTGCCTCCCTCCCACCGCCTCCAGAGTCCCGGGTCCAGATCGTCCTGTCTGAGGGGCCCCAGGGGGCCGAGGGGCCCAGCAGTAGGTCTCAGTCCCACcatcacagagatacagagctgtgccTCCCCTCcacgtcctcctcctcttcttcatcctccCGTCGCGCAGAGACAGTACTAGTCCACCaggccccctcctcctcctcctcttcgtcgTCGTGGGTTACGGAGCACGGAGGAGGTGCGTGTGGTGGTGTCCCACCCCTGGTCACTCTGGCCAGACGTAGAGACTCCGAGAGCAGCGACCAGCACAGCCTGCTTTCTGCCACCTCCGTAGACGACTTCTCTGATGATATCCCCCTGTTAAAGGAAGCCTGATGCCCCTGCAGCAGGACCACTCCCCCTTACAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGCCTTCTACCTGAACTATACCACCCTACCCTAGAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGCCTTCTACCTGAACTATACCACCCTACCCTACAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGGCCTTCTACCTGAATTATACCACCCTACCCTAGAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGCCTTCTACCTGAATTATACCACTCTACCCTACAGCTCTGAACCACAGAACTACAAAATGACCCAGCGTACCAAAAACAGGAATCATGTCAAAGAAACTCAACCTCCCTCCACGTCTGCAACTTCTCACACGGCTCAAAGACAAGAGCAGAGTCCAACTTCACCCCCAACTATTACCAACCGTGAAATTAGACATAACTATTTCCACCACCAGTATCCTCTCCCCACGTCCTGGCTACCCCTTCTGCAATGATCTCTAAACTAACCCTTCTGATCTCTAAACTACCACCCATGTACAGAAAA
>XM_036976233.1
ACAAAATTGGTCTGGTCCCAATGATTTTCAGTAGACCTGCTGGCCTGGGCTTCACCGAGTAAAAACAATTACTGTGGTACATTAGTTATAACGGATAAAGTCAATTTGACGCTTAATACATTAATGCCCGTCTTCATTCTACAGTAGCATAATAAAGATATCCTGACCACAGTCTTCTACTACCCAAGGAAACCGTGCACGAAAGCGAGGCTGCTGACGTGTTTCCGCTTCCCCTCTTCTCGCAGTGAAAGAAACGGTCTGGCTGTTTGTGACGAAGCGGAAGAAGCGACAACACCGCAGGAAAAGACTATTCGTGATTAAATAACAAATCAATTGGAGGATAGTCTGTCTGGCTATTTGAGTCCATGACCAGACAGTGAGAACGGAGAGGAGGGCTTGAAGGTAGCCTTTACGTTGGTTAAGGCTTAGAGGACTGTAGAGTTTCCAGGGGAAAAGATGAGTGATGGAATGGTATTGTGTGAGACGAGAGCCctggcctcctcttcctctctagtcCACAGGCTGGCTACATCTGcaatcctcttcctcctcctctccctgctcccccaCGGACACGCATCAGGATGCCCTCAGCCTCTGGCTGTACAGCATGGGGAGCTGGTGAACCAGACGGAGGCGAACCGAGGCTCCTTCCCTCCTGGTACCCTGCTGTCCTATGGCTGTGAGCCGGGCTACGCCCCCGATGGACCCACCACCATCACCTGTACCACCGCTGGGACATGGTCCCGCCTGCCTCTACGCTGCATCAGCACTAATGtgTGCCCCCCTCCCACGGAGCCAGAGAACGGAGGGTACAGGTGCCACCCGTCCCCCTGCCACCGCCTCACCCAGAAGACCGTGATAGAGTACTTCTGTGACGAGGGCTACGCTCTGAAGGGGGACTACAAGTTCCTCACCTGTCAGAATGGGGAGTGGGACGCACCCATGCAGATCACCTGCCGCCTCAGCCCAGatAAGGAGCTGCGGTCTCCGTTGGCGATGCCAGCGCTGTCCATCGTAGCGTCCACAGCCTCCTCTGTGgccctcctgctgctgctggtggtgcTGTTTGTTCTGCTGCAGCCCAAACTCAAGTCCTTCCACCACagcaggcgtgAGCAGGGTGTGTCAGGCCAGCCAGCCTCCATGGTGGTGGAGGGGCTCCAGGTGGCCCTCCCCTCCTATGAGGAGGCGGTTTACGGTAGCGGAGGTGCCTCCCTCCCACCGCCTCCAGAGTCCCGGGTCCAGATCGTCCTGTCTGAGGGGCCCCAGGGGGCCGAGGGGCCCAGCAGTAGGTCTCAGTCCCACcatcacagagatacagagctgtgccTCCCCTCcacgtcctcctcctcttcttcatcctccCGTCGCGCAGAGACAGTACTAGTCCACCaggccccctcctcctcctcctcttcgtcgTCGTGGGTTACGGAGCACGGAGGAGGTGCGTGTGGTGGTGTCCCACCCCTGGTCACTCTGGCCAGACGTAGAGACTCCGAGAGCAGCGACCAGCACAGCCTGCTTTCTGCCACCTCCGTAGACGACTTCTCTGATGATATCCCCCTGTTAAAGGAAGCCTGATGCCCCTGCAGCAGGACCACTCCCCCTTACAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGCCTTCTACCTGAATTATACCACCCTACCCTACAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGCCTTCTACCTGAACTATACCACCCTACCCTAGAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGCCTTCTACCTGAACTATACCACCCTACCCTACAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGGCCTTCTACCTGAATTATACCACCCTACCCTAGAGCTGACCAGGAAACACTGAGGCTTCTACTGGGGCCTTCTACCTGAATTATACCACTCTACCCTACAGCTCTGAACCACAGAACTACAAAATGACCCAGCGTACCAAAAACAGGAATCATGTCAAAGAAACTCAACCTCCCTCCACGTCTGCAACTTCTCACACGGCTCAAAGACAAGAGCAGAGTCCAACTTCACCCCCAACTATTACCAACCGTGAAATTAGACATAACTATTTCCACCACCAGTATCCTCTCCCCACGTCCTGGCTACCCCTTCTGCAATGATCTCTAAACTAACCCTTCTGATCTCTAAACTACCACCCATGTACAGAAAA

Function

NR:

description
sushi domain-containing protein 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051532.1 False 2157 mRNA 0.55 8 38825783 38885772
XM_036976233.1 True 2217 mRNA 0.55 7 38825789 38885772

Neighbor

gene id symbol gene type direction distance location
LOC110522590 NA coding upstream 5259 38817900 ~ 38820524 (+)
thbs1b LOC106608163 coding upstream 174721 38626216 ~ 38651062 (+)
LOC110522580 LOC106608254 coding upstream 534245 38288197 ~ 38291538 (+)
LOC110521100 LOC106608253 coding upstream 591105 37969722 ~ 38234678 (+)
LOC110522584 LOC106608258 coding upstream 926575 37897636 ~ 37899208 (+)
LOC110522591 LOC105024333 coding downstream 4542 38890314 ~ 38897681 (+)
LOC118964476 NA coding downstream 13632 38898435 ~ 38900534 (+)
LOC110522592 LOC106608157 coding downstream 35566 38921338 ~ 38942012 (+)
LOC110521104 LOC106608154 coding downstream 74763 38960535 ~ 38994558 (+)
LOC118964477 NA coding downstream 108913 38994685 ~ 38995753 (+)
G350210 NA non-coding upstream 8395 38816347 ~ 38817388 (+)
G350206 NA non-coding upstream 16414 38808930 ~ 38809369 (+)
G350232 NA non-coding upstream 19553 38805720 ~ 38806230 (+)
G350225 NA non-coding upstream 42881 38781874 ~ 38782902 (+)
G350208 NA non-coding downstream 15336 38901108 ~ 38901586 (+)
G350255 NA non-coding downstream 19197 38904969 ~ 38905190 (+)
G350260 NA non-coding downstream 26080 38911852 ~ 38912080 (+)
G350266 NA non-coding downstream 53241 38939013 ~ 38940316 (+)
G349877 NA other upstream 391759 38432179 ~ 38434024 (+)
G349855 NA other upstream 420319 38404645 ~ 38405464 (+)
LOC110522576 LOC106608246 other upstream 1328777 37445368 ~ 37501952 (+)
G348133 NA other upstream 1664660 37160094 ~ 37161123 (+)
LOC110522562 LOC105017690 other upstream 2752827 36039096 ~ 36123362 (+)
G350211 NA other downstream 17958 38903730 ~ 38904774 (+)
G350665 NA other downstream 502369 39388141 ~ 39389474 (+)
G351441 NA other downstream 1248915 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 2104387 40990159 ~ 40990505 (+)

Expression


Co-expression Network