LOC118964476


Basic Information

Item Value
gene id LOC118964476
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38898435 ~ 38900534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051533.1
GCCACCTTCAAAATGGCGGAACACAGCTGGATGTTCTGACATCCCGTCTCCATGGCGATGGTCCTCTGCCCCctgaggaaagaaggaaggatgtCCAAATAAGGATTTGATTGCTTGACATTGAATTCTAACTGAGGTATGAAAGGACGTATCCTAAAGTGTAGCCAATGAGGGGCATGAGGGCAGCAGTGGCCATTAGTTGAGGGGACAGGACGGTCAGCATCACATT
>TU396295
aagaacaccctctgtgttctgttagacaggtaactctttatccacaatatagcagggggtgtaaagccataataCAAGTTTTTCCAGTAGCAGACTATggtcgataatgtcaaaagccgcactgaagtctaacaacaCAATTgtcatcgtccgggttagggagggtttggccggtagggatatccttgtctcatcgcgcacctgtggcgggccgggcgcagtgcgcgctaaccaaggttaggtagcggaatgacttttgcttccctccaggcctgaggtcaCACATATTTAttttgcttctttgcaccccattatttctatctctactttgcacattctcccactgcaaatctactattccagtgttttacttgctatattgtatttactttgccaccatgggcttttttttgcctttacctcccttatctcacctcatttgctcacattgtattattgactgtatgtttgttttactccatgtgtaactctgtgtcgttgtatctgtcgaactgctatgctttatcttggccaggtcgcagttgcaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaataaatacataaaaaaaaaatcataaaacatctcagagtgctgatctaggatcagtttggccttcTAACAAAATAAAGAATAAGACCGGGGATACCTGATCTTAGATCAGTACTCCtcctctgagacactttgtgatgACAAAACTGATGTAATCATAAGGGACCTGATGTCCAGGTCTCAGACTAGATGCTTTTTTTTAACTGTATATCATTCAAAGACAAGGGTCAGTCAAGCCCACCTTTCTTTGTTGTTTTAAAGAACCTCTGGTGAACCCAGAAGAGGACGATGAGCAGTAAGGCCTCTCCCACTTGGAACACTATGTAGACTATAGGGAAGAGGTAGAGCGGACCAATCACATCGGGAGGGAACGCCACCTTCAAAATGGCGGAACACAGCTGGATGTTCTGACATCCCGTCTCCATGGCGATGGTCCTCTGCCCCctgaggaaagaaggaaggatgtCCAAATAAGGATTTGATTGCTTGACATTGAATTCTAACTGAGGTAAATGAGTTTCTTTCCTCCAAGCATTTAGCATTAGAAATCTACTGAGCTGGAATATACTTTTACTAGAGGAATAGGAAGATacgttgtttttttttcttataGAAAAACTTCACATGCAATCTATCAACATAATTATAATCTTGATCTTCACCATCATGGTAATCCTAATCTTCATCAATTTACAGTTTACCTTCAacatcatcctcatcaccatGACTTACGATCTGTTGACTCTGAACAGGTATGAAAGGACGTATCCTAAAGTGTAGCCAATGAGGGGCATGAGGGCAGCAGTGGCCATTAGTTGAGGGGACAGGACGGTCAGCATCACATTCATTCTTCCTCTGGTCACGCTGGCCAATAGGCCGATCACTACCATGGATATCAACAGGAGGGACAGACCGATCTGAAGAGCAGGAGGACATTCAGCCACAAACTGTATATTATTATCAATTTATGCTGGGCTGTCTAAAACAACCTGTATGTTTTCAATGTTTTGAACTTTTAAAATGAGGCCCTTTACCAGATTTGTGTTTTTCAACAAGATTGTAAAATCTAACTGTAAACCTAACTACCCAGTTGAAGATATTACTCAAAAGCTAGCCTCGAAGCCCTCCAGGCTTCCCTAAAACAGGAAGGGAGTTTCCCTAAAACTCCTCCAAGGAAGGCATGACAACGACATGATTTTGGAGGTATGGCAACGTGAGACTACCCAAAACGCAGACCATTATCTGTCATACCTTGGTAATGGTCTTGGAGTACTGCGGCCTGTAGTAGTTGATGAGGATGCCGATGCCACAAGGGAACAGAGTCATGACCAGGGCCAGAGTGATGCCAGCGTAGGGGACAGCACTCTCCAGGTTGGAGAAGCCCTGGCAGTATAGGTAGAGGAGCAGTGGCATCATACCCAGGGCTAGGAATGTAGAGCAGGTAGTCATCACAATactgaggaggaagagagggagagagaaggagggacggagagagagaca

Function

NR:

description
sodium/bile acid cotransporter-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051533.1 False 229 mRNA 0.50 2 38899404 38899876
TU396295 True 2100 lncRNA 0.44 1 38898435 38900534

Neighbor

gene id symbol gene type direction distance location
LOC110522591 LOC105024333 coding upstream 1723 38890314 ~ 38897681 (+)
LOC118964474 LOC106608159 coding upstream 13632 38825783 ~ 38885772 (+)
LOC110522590 NA coding upstream 78880 38817900 ~ 38820524 (+)
thbs1b LOC106608163 coding upstream 248342 38626216 ~ 38651062 (+)
LOC110522580 LOC106608254 coding upstream 607866 38288197 ~ 38291538 (+)
LOC110522592 LOC106608157 coding downstream 21462 38921338 ~ 38942012 (+)
LOC110521104 LOC106608154 coding downstream 60659 38960535 ~ 38994558 (+)
LOC118964477 NA coding downstream 94809 38994685 ~ 38995753 (+)
LOC110521105 LOC106571085 coding downstream 135518 39035394 ~ 39190157 (+)
LOC118964499 NA coding downstream 212847 39112723 ~ 39113347 (+)
G350253 NA non-coding upstream 16980 38880676 ~ 38882424 (+)
G350249 NA non-coding upstream 28411 38870709 ~ 38870993 (+)
G350244 NA non-coding upstream 36538 38862473 ~ 38862866 (+)
G350210 NA non-coding upstream 82016 38816347 ~ 38817388 (+)
G350208 NA non-coding downstream 1232 38901108 ~ 38901586 (+)
G350255 NA non-coding downstream 5093 38904969 ~ 38905190 (+)
G350260 NA non-coding downstream 11976 38911852 ~ 38912080 (+)
G350266 NA non-coding downstream 39137 38939013 ~ 38940316 (+)
G350270 NA non-coding downstream 55697 38955573 ~ 38993719 (+)
G349877 NA other upstream 465380 38432179 ~ 38434024 (+)
G349855 NA other upstream 493940 38404645 ~ 38405464 (+)
LOC110522576 LOC106608246 other upstream 1402398 37445368 ~ 37501952 (+)
G348133 NA other upstream 1738281 37160094 ~ 37161123 (+)
G350211 NA other downstream 3854 38903730 ~ 38904774 (+)
G350665 NA other downstream 488265 39388141 ~ 39389474 (+)
G351441 NA other downstream 1234811 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 2090283 40990159 ~ 40990505 (+)
G352340 NA other downstream 2310371 41210247 ~ 41210998 (+)

Expression


Co-expression Network