LOC110522614 (dpf3)


Basic Information

Item Value
gene id LOC110522614
gene name dpf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39393845 ~ 39441981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976255.1
GGTTAAGGAGCAGGTCGCCTAGGATCTTACTGGTTGTTTTTTTCATAGGGTCCCAAACAGCTCCGAGATTTGGAATATTTGCCTACTGTCTAGTAGCAAAATGGCGACTGTCATTCAGAATCCTCTCAAATCGCTAGGTGACCAGTTCTACCGGGAGGCCATAGAACACTGTCGCAGCTACAACGCCCGTCTGTGTGCCGAGCGAAGCGTCCGTATGCCCTTCCTGGACAACCAAACTGGCGTGGCCCAGAACAACTGCTACATCTGGATGGAACAGCGCCACCGCGGGCCAGgtctgggTGCTGGACAGATGTATGCGTACCCAGCTCGGTGTTGGAGGAAGAAGAGGCGGCACCCCCCTATGGACCCTCAGCTACGACTCTGTGAACTACGACTGGagGCAGAGCTGGCCCCTAAGAGGGAGCCCTCCCCAGGAGAGGCCACAGCTCTGGAGACTCTGCTCAGAGGGGAGGGACAACTGGAGAAGAAGAAAGACATCAAGGAGGACGAGACCCTTCTGGAGATACAGAGGGTCTTGGAGGCTGACGAGAATGGGGACGATTTTCATCATGACAATGAGGACTTTGAAGTGGACACTCCGAAGAGGAAGCAGAGGAAAGGAAGGGGCCGAGGATCCAGCCGCAGGAGGGCGGAGGCTGTGTCCAACGACGACGTGGATAAACCTTACGTCTGTGACAACAGATACAAACAAAAGCATAACTCAAAAACTGCTGACTCAGTCTGTGGGAAGCGCTATAAGAACCGTCCAGGTCTGAGCTAccactacgcacacacacacctggcggaggaagagggggaggagagggaggagagggaggaagagatgccACCGACCCCGCCACCACACCGACCAGACCCAGACCCCGACAACCACAAACCTCAGAGGGCGGCAGATGGCTCCATCATCCCTAACGACTACTGTGACTTCTGTCTGGGAGACTCTGACTCTAACAGGAAGACTGGCCAGGCTGAGGAGCTGGTGTCCTGCTCTGACTGCGGTCGCTCCGGCCACCCTACCTGTCTGCAGTTCACAGACAACATGATGATGGCGGTGAAGACCTACCAGTGGCAGTGCATCGAGTGCAAGTCCTGCAGTCTCTGTGGCACCTCCGAGAACGACgACCAGCTGTTGTTCTGTGACGACTGTGACAGAGGATACCACATGTACTGTCTGAAGCCCCCCATGACCCAACCTCCTGAAGggaGCTGGAGCTGTCACCTGTGTTTGGATCTGTTGAAGGACAAGGCCTCAGCCTATGAAGAGCCATAGcttctctaacacacacacacacacacacacacacacacacaatggatttACAGGCTCAGGGTGCACATTCAGTCTCATCTCTTTCAGCTTCTCAGTTTCTATCTCAGTACTATCCTCTCTACCTCTAAAGTTGAAACAATGTCATGATGTGTGGGTTATAAAAACCACAAATGAGAATCGTCAAATAGTAACCTTTGCTCCACCGTGTTTGACACTATGCTGTTCTACAATGTCTTCTGACTGTTAGCTCGCTAGAGATGTTTgtgctgaggtaaaaaaaaaaaaaaaaaaaagcattat
>XM_036976256.1
GTATTCAGAGGGCATGTCTTGGTAGCAGGATGGCTCAACGGCAGCTGTGTGCTCTGACTGAGACGGAGGGAATATGTTTAGCTAAGATAGCTCTAGCATGCCAAATGAACGTGAGTGAGCTGAAGACAAGTAGCATCCCAATATGCTAGGTGACCAGTTCTACCGGGAGGCCATAGAACACTGTCGCAGCTACAACGCCCGTCTGTGTGCCGAGCGAAGCGTCCGTATGCCCTTCCTGGACAACCAAACTGGCGTGGCCCAGAACAACTGCTACATCTGGATGGAACAGCGCCACCGCGGGCCAGgtctgggTGCTGGACAGATGTATGCGTACCCAGCTCGGTGTTGGAGGAAGAAGAGGCGGCACCCCCCTATGGACCCTCAGCTACGACTCTGTGAACTACGACTGGagGCAGAGCTGGCCCCTAAGAGGGAGCCCTCCCCAGGAGAGGCCACAGCTCTGGAGACTCTGCTCAGAGGGGAGGGACAACTGGAGAAGAAGAAAGACATCAAGGAGGACGAGACCCTTCTGGAGATACAGAGGGTCTTGGAGGCTGACGAGAATGGGGACGATTTTCATCATGACAATGAGGACTTTGAAGTGGACACTCCGAAGAGGAAGCAGAGGAAAGGAAGGGGCCGAGGATCCAGCCGCAGGAGGGCGGAGGCTGTGTCCAACGACGACGTGGATAAACCTTACGTCTGTGACAACAGATACAAACAAAAGCATAACTCAAAAACTGCTGACTCAGTCTGTGGGAAGCGCTATAAGAACCGTCCAGGTCTGAGCTAccactacgcacacacacacctggcggaggaagagggggaggagagggaggagagggaggaagagatgccACCGACCCCGCCACCACACCGACCAGACCCAGACCCCGACAACCACAAACCTCAGAGGGCGGCAGATGGCTCCATCATCCCTAACGACTACTGTGACTTCTGTCTGGGAGACTCTGACTCTAACAGGAAGACTGGCCAGGCTGAGGAGCTGGTGTCCTGCTCTGACTGCGGTCGCTCCGGCCACCCTACCTGTCTGCAGTTCACAGACAACATGATGATGGCGGTGAAGACCTACCAGTGGCAGTGCATCGAGTGCAAGTCCTGCAGTCTCTGTGGCACCTCCGAGAACGACgACCAGCTGTTGTTCTGTGACGACTGTGACAGAGGATACCACATGTACTGTCTGAAGCCCCCCATGACCCAACCTCCTGAAGggaGCTGGAGCTGTCACCTGTGTTTGGATCTGTTGAAGGACAAGGCCTCAGCCTATGAAGAGCCATAGcttctctaacacacacacacacacacacacacacacacac
>XM_036976257.1
TGGTTAAGGAGCAGGTCGCCTAGGATCTTACTGGTTGTTTTTTTCATAGGGTCCCAAACAGCTCCGAGATTTGGAATATTTGCCTACTGTCTAGTAGCAAAATGGCGACTGTCATTCAGAATCCTCTCAAATCGCTAGGTGACCAGTTCTACCGGGAGGCCATAGAACACTGTCGCAGCTACAACGCCCGTCTGTGTGCCGAGCGAAGCGTCCGTATGCCCTTCCTGGACAACCAAACTGGCGTGGCCCAGAACAACTGCTACATCTGGATGGAACAGCGCCACCGCGGGCCAGgtctgggTGCTGGACAGATGTATGCGTACCCAGCTCGGTGTTGGAGGAAGAAGAGGCGGCACCCCCCTATGGACCCTCAGCTACGACTCTGTGAACTACGACTGGagGCAGAGCTGGCCCCTAAGAGGGAGCCCTCCCCAGGAGAGGCCACAGCTCTGGAGACTCTGCTCAGAGGGGAGGGACAACTGGAGAAGAAGAAAGACATCAAGGAGGACGAGACCCTTCTGGAGATACAGAGGGTCTTGGAGGCTGACGAGAATGGGGACGATTTTCATCATGACAATGAGGACTTTGAAGTGGACACTCCGAAGAGGAAGCAGAGGAAAGGAAGGGGCCGAGGATCCAGCCGCAGGAGGGCGGAGGCTGTGTCCAACGACGACGTGGATAAACCTTACGTCTGTGACATCTGTGGGAAGCGCTATAAGAACCGTCCAGGTCTGAGCTAccactacgcacacacacacctggcggaggaagagggggaggagagggaggagagggaggaagagatgccACCGACCCCGCCACCACACCGACCAGACCCAGACCCCGACAACCACAAACCTCAGAGGGCGGCAGATGGCTCCATCATCCCTAACGACTACTGTGACTTCTGTCTGGGAGACTCTGACTCTAACAGGAAGACTGGCCAGGCTGAGGAGCTGGTGTCCTGCTCTGACTGCGGTCGCTCCGGCCACCCTACCTGTCTGCAGTTCACAGACAACATGATGATGGCGGTGAAGACCTACCAGTGGCAGTGCATCGAGTGCAAGTCCTGCAGTCTCTGTGGCACCTCCGAGAACGACgACCAGCTGTTGTTCTGTGACGACTGTGACAGAGGATACCACATGTACTGTCTGAAGCCCCCCATGACCCAACCTCCTGAAGggaGCTGGAGCTGTCACCTGTGTTTGGATCTGTTGAAGGACAAGGCCTCAGCCTATGAAGAGCCATAGcttctctaacacacacacacacacacacacacacacacac

Function

symbol description
dpf3 Predicted to enable histone binding activity and transcription coregulator activity. Acts upstream of or within cardiac muscle tissue morphogenesis and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of SWI/SNF complex and nBAF complex. Is expressed in central nervous system; pericardial region; skeletal muscle cell; and somite. Orthologous to human DPF3 (double PHD fingers 3).

NR:

description
zinc finger protein DPF3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0016514 SWI/SNF complex cellular_component
GO:0042393 histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22198 BAF45B_C, DPF1_3; BRG1-associated factor 45B/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976255.1 False 1591 mRNA 0.53 12 39393845 39441980
XM_036976256.1 False 1343 mRNA 0.56 12 39394105 39417134
XM_036976257.1 True 1290 mRNA 0.56 11 39394105 39441981
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Neighbor

gene id symbol gene type direction distance location
LOC110522594 LOC106571083 coding downstream 485361 38906749 ~ 38908484 (-)
LOC110521103 LOC106608191 coding downstream 487723 38899139 ~ 38906122 (-)
LOC110522589 LOC106608160 coding downstream 578904 38809713 ~ 38814941 (-)
LOC110521102 LOC106608162 coding downstream 588086 38765813 ~ 38805759 (-)
LOC118964498 NA coding downstream 706975 38679954 ~ 38686870 (-)
LOC118964478 NA coding upstream 20957 39462938 ~ 39473153 (-)
LOC110522615 LOC106608271 coding upstream 81355 39523336 ~ 39527140 (-)
chac1 chac1 coding upstream 211175 39653156 ~ 39655304 (-)
dll4 LOC106608273 coding upstream 236245 39678226 ~ 39706221 (-)
LOC118964500 NA coding upstream 688585 40130566 ~ 40131883 (-)
G350906 NA non-coding downstream 4396 39388590 ~ 39389449 (-)
G350898 NA non-coding downstream 5437 39388188 ~ 39388408 (-)
G350914 NA non-coding downstream 6557 39386910 ~ 39387288 (-)
G350913 NA non-coding downstream 7820 39385810 ~ 39386025 (-)
G350912 NA non-coding downstream 8753 39384803 ~ 39385092 (-)
G350936 NA non-coding upstream 3084 39445065 ~ 39445271 (-)
G350939 NA non-coding upstream 7601 39449582 ~ 39449825 (-)
G350902 NA non-coding upstream 35762 39477743 ~ 39536764 (-)
G351012 NA non-coding upstream 169381 39611362 ~ 39611961 (-)
G351013 NA non-coding upstream 170891 39612872 ~ 39613618 (-)
G350563 LOC106608153 other downstream 242608 39150509 ~ 39151237 (-)
G350352 LOC106608159 other downstream 507963 38884352 ~ 38885882 (-)
G349765 NA other downstream 1176958 38215879 ~ 38216887 (-)
G347456 NA other downstream 3508935 35884547 ~ 35884910 (-)
G347016 NA other downstream 3841260 35552073 ~ 35552585 (-)
G351054 NA other upstream 276803 39718784 ~ 39719131 (-)
G351886 NA other upstream 1223111 40665092 ~ 40665478 (-)
G351896 NA other upstream 1235485 40677466 ~ 40678114 (-)
G352537 NA other upstream 1980266 41422247 ~ 41422752 (-)
G352723 NA other upstream 2085987 41527968 ~ 41529100 (-)

Expression

LOC110522614(dpf3) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110522614(dpf3) Expression in each Bioproject

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LOC110522614(dpf3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network