LOC110522626 (LOC106608310)


Basic Information

Item Value
gene id LOC110522626
gene name LOC106608310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40708662 ~ 40714024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601088.2
ATTCAGGTAGGTCCCCCGTCGTTTCggttggttcctagtgaatacacccaaTGTTACGGGAAAATGGTAGGAACATTTCTTCTCAATTGCGTTTCATTTCGGACAATAATACAGCGTAAGGCCGGAAACATTAGACAGCGGAAAAGAAGCAAACTACATATTTTCAAAGTAGGCTATTTCGGAGATAACTTGCTAGCAGTCATGTCGAGCACAGATATATTTCAGACACAGTTATCCCAAATCATGGGGTTATTAGTTGAATCAACAGTTAGCGAGATGGGGCGACTTCTCGACGTGTGTGCTGCTGTTTTGGAGAATAAAGACAATCGTTCCCTGAAGAGAGAAATGGAGCGTGTGAATATAACCAACAAAATAAAGTTTGCGTCATTCATGGAAGTGTTGAGTAAAAGCTCGATGGAGAAAATATCATTACTGGTGACTGTGGACGAGATGGAGGTGAGAGCCGTGGAGAAGACTGGTGGAGAAGGCACAAGTGGTGGAGAAGCAGTAAACTTGCTTGACCCAGAAGTAAAATCACGTGTAATTATAATCTGTCCAGGAGATATTAGAGAAGCAGTTGCGACTCAAAAAGGAGCCGTAAAGGACGAGGGATCTTCTGAGTCTGATAGTCAGGAGGATTACCCTGGCCTTGCCCCCTTGCCCTCACCTTCATCAGATGAGGAATGGCTCCCTGAGGTTGATACCAGCCAGGGTGATGACCTTGACCCTCAGGCACCATCTGCATCTAGGTTGAAGATACCCAGATCTGCTTCGGACCCAGACAAACAAGACGCAGGTAGGGATGGAGATGATCAAGATGTCCAATGTGGAGATTCTGCAGACGCCGCCCACCAGGGGCCCCTCATCTGTACCCACCAGGGGCCCCTCATCTGTTCCCACTGTGGAAAATGTTTCAAGGAGaaatggtatctgacgagacacCTTCAGTCCCATACAAAATCTTACAGATGCTCTCATTGTGCGAAAGGTTTTAATCTGGCGAAGCAGCTAGCAAAACATTCCATTAAACACCAGGAGAACACCTTCAGTTGTACCGATTGCGACGCGGTGTTTCGCCAGAAATGTACTTTGCAGTCGCACAAGAAACGTCACAAAACGGAGAAAACGGTCACGTGCGCGGTTTGTGAAAAAAAGTTTGTAGGGGAAAGGCACAAGTGCATTGTAAAGCAGAGGACGTTCAGCTGCTCTTCCTGCCCAAAGGTCTTAAAGACCAGAGAAGGATTGTCTTATCACCAGGGAACACACTCCGGGGAGAGGAAGTATTGCTGTGAGACATGCGGCAAAACGTTCTTCACCGGCGTGTCCTTAAAAACCCACATGATGACTCATAAAGAGAAGGATCatagctgtactgtatgtggCCAACCTTTCAACAATGGACACGCTCTCAGAAAGCACATGGTGGCCAGCCACCCTGGAGAAACGCCAGAGAAACGCTTCGTCTGCGACGTGTGTGGCAAATGTTTCGCCAAAAGAGACCATCTGTATAAACACATGAGGAGACACAAGGAAGAAAAACCCTTTTCCTGTGACGTTTGTGGCAAGAAGTTTCACTCTTCGGGTAATTGCAAAAGACACGAGATAACGCACACAGGTGAGAAACTATACCACTGTGACctttgtgggaagagttttacccAGTCCGGAACCCTAACCATACATAAACTAAACACGCACACGGACGGCGATGAAAAGCCTTCTTTCAAGTGTGAGATTTGTGGGGAAGTCTTTCCAAGACGTTATACCCTAAAAAATCACATGGTCACTCACACGGGGAAGAAACCATGTCAATGTAGCGTTTGTGGGAAAGGTTTCTTTAGCAATCCTACTCTTAAAGCTCACATGCtcattcacacaggggagaaaccgtttgagtgtgatcaatgtgggaaaagGTTCACCCAGTCGAGTCATCTGAAATATCACGAGCGGCATGTGCACACGGGTGTCAAACCATTCGTGTGTGACATCTGTGGGAAGGCCTATGCAAATAGACAGAATCTGAAACTCCACAAGTGCAGTGCTTCTGCTAAGCAGTAGTCTGCGCAGTGCTTATGCTAAACGGTAGTAATCTAGCGTCACAACTAGATAATTGTCACCCTGTCAATGagcaatatacactgctcaaaaaaataaa
>XM_021601089.2
tttttttacatttagctagctaacgttaacctataacagggctctctaaccctgttcctgaacCACTACCGTCCTGTGGGGTTTTCGCTCCAACCTTAATCTAGCGCTCCGGATTATCATGtgagttacaactggggttgaaaCGAAAACCTACATGAGGATAAAGTTTGCGTCATTCATGGAAGTGTTGAGTAAAAGCTCGATGGAGAAAATATCATTACTGGTGACTGTGGACGAGATGGAGGTGAGAGCCGTGGAGAAGACTGGTGGAGAAGGCACAAGTGGTGGAGAAGCAGTAAACTTGCTTGACCCAGAAGTAAAATCACGTGTAATTATAATCTGTCCAGGAGATATTAGAGAAGCAGTTGCGACTCAAAAAGGAGCCGTAAAGGACGAGGGATCTTCTGAGTCTGATAGTCAGGAGGATTACCCTGGCCTTGCCCCCTTGCCCTCACCTTCATCAGATGAGGAATGGCTCCCTGAGGTTGATACCAGCCAGGGTGATGACCTTGACCCTCAGGCACCATCTGCATCTAGGTTGAAGATACCCAGATCTGCTTCGGACCCAGACAAACAAGACGCAGGTAGGGATGGAGATGATCAAGATGTCCAATGTGGAGATTCTGCAGACGCCGCCCACCAGGGGCCCCTCATCTGTACCCACCAGGGGCCCCTCATCTGTTCCCACTGTGGAAAATGTTTCAAGGAGaaatggtatctgacgagacacCTTCAGTCCCATACAAAATCTTACAGATGCTCTCATTGTGCGAAAGGTTTTAATCTGGCGAAGCAGCTAGCAAAACATTCCATTAAACACCAGGAGAACACCTTCAGTTGTACCGATTGCGACGCGGTGTTTCGCCAGAAATGTACTTTGCAGTCGCACAAGAAACGTCACAAAACGGAGAAAACGGTCACGTGCGCGGTTTGTGAAAAAAAGTTTGTAGGGGAAAGGCACAAGTGCATTGTAAAGCAGAGGACGTTCAGCTGCTCTTCCTGCCCAAAGGTCTTAAAGACCAGAGAAGGATTGTCTTATCACCAGGGAACACACTCCGGGGAGAGGAAGTATTGCTGTGAGACATGCGGCAAAACGTTCTTCACCGGCGTGTCCTTAAAAACCCACATGATGACTCATAAAGAGAAGGATCatagctgtactgtatgtggCCAACCTTTCAACAATGGACACGCTCTCAGAAAGCACATGGTGGCCAGCCACCCTGGAGAAACGCCAGAGAAACGCTTCGTCTGCGACGTGTGTGGCAAATGTTTCGCCAAAAGAGACCATCTGTATAAACACATGAGGAGACACAAGGAAGAAAAACCCTTTTCCTGTGACGTTTGTGGCAAGAAGTTTCACTCTTCGGGTAATTGCAAAAGACACGAGATAACGCACACAGGTGAGAAACTATACCACTGTGACctttgtgggaagagttttacccAGTCCGGAACCCTAACCATACATAAACTAAACACGCACACGGACGGCGATGAAAAGCCTTCTTTCAAGTGTGAGATTTGTGGGGAAGTCTTTCCAAGACGTTATACCCTAAAAAATCACATGGTCACTCACACGGGGAAGAAACCATGTCAATGTAGCGTTTGTGGGAAAGGTTTCTTTAGCAATCCTACTCTTAAAGCTCACATGCtcattcacacaggggagaaaccgtttgagtgtgatcaatgtgggaaaagGTTCACCCAGTCGAGTCATCTGAAATATCACGAGCGGCATGTGCACACGGGTGTCAAACCATTCGTGTGTGACATCTGTGGGAAGGCCTATGCAAATAGACAGAATCTGAAACTCCACAAGTGCAGTGCTTCTGCTAAGCAGTAGTCTGCGCAGTGCTTATGCTAAACGGTAGTAATCTAGCGTCACAACTAGATAATTGTCACCCTGTCAATGagcaatatacactgctcaaaaaaataaa

Function

NR:

description
oocyte zinc finger protein XlCOF6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601088.2 False 2158 mRNA 0.46 4 40708662 40714024
XM_021601089.2 True 1946 mRNA 0.47 4 40709292 40714024

Neighbor

gene id symbol gene type direction distance location
LOC110521109 LOC106608311 coding upstream 34085 40650654 ~ 40674839 (+)
paqr8 paqr8 coding upstream 77841 40626393 ~ 40630821 (+)
stmn4 LOC106608277 coding upstream 111273 40579686 ~ 40597389 (+)
LOC110522596 LOC106591683 coding upstream 270854 40391650 ~ 40437808 (+)
LOC118936457 NA coding upstream 322359 40379534 ~ 40386303 (+)
si:ch211-63o20.7 stk35 coding downstream 7502 40721526 ~ 40732661 (+)
LOC110521111 LOC106571044 coding downstream 64334 40778358 ~ 40868194 (+)
hmbox1b LOC106608307 coding downstream 154316 40868340 ~ 40887505 (+)
abcd4 abcd4 coding downstream 204216 40918240 ~ 40945004 (+)
LOC118964481 NA coding downstream 226607 40940631 ~ 40940967 (+)
G351847 NA non-coding upstream 9364 40699076 ~ 40699298 (+)
G351843 NA non-coding upstream 17623 40690336 ~ 40691039 (+)
G351840 NA non-coding upstream 20677 40687346 ~ 40687985 (+)
G351826 NA non-coding upstream 30492 40677593 ~ 40678170 (+)
G351816 NA non-coding downstream 1632 40715656 ~ 40716059 (+)
G351940 NA non-coding downstream 22213 40736237 ~ 40736542 (+)
G351960 elp3 non-coding downstream 44471 40758495 ~ 40764040 (+)
G351963 NA non-coding downstream 63340 40777364 ~ 40778213 (+)
G351441 NA other upstream 571889 40134687 ~ 40136773 (+)
G350665 NA other upstream 1319188 39388141 ~ 39389474 (+)
G350211 NA other upstream 1803888 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 1811006 38890314 ~ 38897681 (+)
G349877 NA other upstream 2274638 38432179 ~ 38434024 (+)
G352136 LOC106608303 other downstream 276135 40990159 ~ 40990505 (+)
G352340 NA other downstream 496223 41210247 ~ 41210998 (+)
G352341 NA other downstream 497089 41211113 ~ 41214206 (+)
G352477 NA other downstream 652177 41366201 ~ 41366607 (+)
G353125 NA other downstream 1410652 42124676 ~ 42125759 (+)

Expression


Co-expression Network