LOC110521114 (LOC106608298)


Basic Information

Item Value
gene id LOC110521114
gene name LOC106608298
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41071482 ~ 41085688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976342.1
GGCAAGCATCAATTCTTCTCTCTTTTCTGGACAGCTATCTTCACTCTGAGCAACAGCTCACTCGGTGTATCATGTCCCAGCTGATTAAATGGTTCAGTAACTTCAGAGAGTTCTACTATATTCAGATGGAGAAGTTTGCCCGCCGGGCCCGAGTGGAGGGGGTTAACAGTGTGAGGGACGTAGCAGTGAGCAGAGACTCGGAGCTCTTCAGAGCCCTCAACATGCACTACAACAAGGCCAATGACTTTCAGGTTCCTGACAGGTTCCTTGAAGTGGCTGAGATCACACTACAGGAGTTTTACATCTCAATCTCCCTGGCCAGAGACTCAGACCCATCCTGGAAGAAAGCCATCTATAAGGTCATCAGTAAACTGGACAGTGACGTACCGGCTGAATTCAAAGCCCCCCTCACAACATAGAAAGAGACAGACGGAGGCTGCCGTATGTAAAAACAAAGTGTATTTTTCCCTGCATGGGCCACGTCTTGAATCGAAGCCATGCTAAACGTACAACAGCAGGACAGGGTACCCAGTGTTTCAATATATGGTCAACGTGGACGGttctgtaagtcgctttggaaaAACAGTGTAAAGGTAAATGTTGTTAACGCCATTTCCCATTCAGAGGTCCGTCGTGTGAAATGTGTGGCTGTACAGTAGGCTTCCCATTCAGAGGTCCGTCGTGTGAAATGTGTGTCTGTACAGTAGGCCCATGTCACAGCTGGGTTTTTTTATTCACAGGAGGATCGTAGAGCAAATTGCAATGTagttttaataaaaataaaaaaaacaatgtatacaatttTGATTGATATTGAGGCATGCGTTACTTACTATAGAATCTGTTATTAAAACCATGTTGGCGCATGTGAATTAAATTTGTATTTTTTGCTACATCAGATCAATCTAGCAATAATACAAGAGACCTTTCATTTAGAATTTTTCAGTGTGCGTCAATTACGAAGGCAGTTTCAGGCATGTTAGTGAATGGGAGGACGGCATTATTGCATTACATAatctaaaaatgttttaaaagtttCAAGAGACCACTGATGGTTTCTAAACTGTTGTAAAGAAACAACTGgacagacaaaaaaacagaatccACACAAGTACAAAATCCTTTAATACACAATCGGTGCAAGTCAGCATGCGTTTCATTCTACTGGCCTGGTGTGATCAGAACAATGAAACCTGTATAACGTGTCAAACCTAAACTCACTTAACACTGACGGCACCCCAATACCATTAACTACATATTCACTACATACTGCATGGACTTTGGCGAAAGGAGGAGACGTCcagcacatttttttattttttttaattttaccccttttttctccccaatttcgtggtatccaattgttgtagtagttactatcttatctcattgctac
>TU398802
CCTTTTTCTCCGATATCCAGCTCACTCGGTGTATCATGTCCCAGCTGATTAAATGGTTCAGTAACTTCAGAGAGTTCTACTATATTCAGATGGAGAAGTTTGCCCGCCGGGCCCGAGTGGAGGGGGTTAACAGTGTGAGGGACGTAGCAGTGAGCAGAGACTCGGAGCTCTTCAGAGCCCTCAACATGCACTACAACAAGGCCAATGACTTTCAGGTA

Function

NR:

description
prospero homeobox protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976342.1 False 1399 mRNA 0.42 3 41071482 41085688
TU398802 True 218 lncRNA 0.50 2 41078736 41080076

Neighbor

gene id symbol gene type direction distance location
LOC118964399 LOC106608301 coding upstream 30443 41038237 ~ 41041039 (+)
abcd4 abcd4 coding upstream 126478 40918240 ~ 40945004 (+)
LOC118964481 NA coding upstream 130515 40940631 ~ 40940967 (+)
hmbox1b LOC106608307 coding upstream 183977 40868340 ~ 40887505 (+)
LOC110521111 LOC106571044 coding upstream 203288 40778358 ~ 40868194 (+)
LOC110522636 LOC106608297 coding downstream 341192 41426880 ~ 41445268 (+)
LOC110522641 LOC106608294 coding downstream 563104 41648792 ~ 41651426 (+)
LOC110522642 LOC106608292 coding downstream 578914 41664602 ~ 41675680 (+)
LOC110522643 LOC106608291 coding downstream 590573 41676261 ~ 41681946 (+)
LOC110522644 ptk2b coding downstream 798577 41884265 ~ 41934580 (+)
G352195 NA non-coding upstream 6745 41064217 ~ 41064737 (+)
G352194 NA non-coding upstream 11147 41055280 ~ 41060335 (+)
G352179 NA non-coding upstream 48433 41022787 ~ 41023049 (+)
G352173 NA non-coding upstream 58965 41012205 ~ 41012517 (+)
G352169 NA non-coding upstream 59627 41009555 ~ 41011855 (+)
G352213 NA non-coding downstream 5367 41091055 ~ 41097706 (+)
G352231 NA non-coding downstream 39316 41125004 ~ 41126843 (+)
G352240 NA non-coding downstream 59142 41144830 ~ 41147018 (+)
G352316 NA non-coding downstream 98655 41184343 ~ 41184578 (+)
G352319 NA non-coding downstream 100736 41186424 ~ 41186634 (+)
G352136 LOC106608303 other upstream 80977 40990159 ~ 40990505 (+)
G351441 NA other upstream 934709 40134687 ~ 40136773 (+)
G350665 NA other upstream 1682008 39388141 ~ 39389474 (+)
G350211 NA other upstream 2166708 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 2173826 38890314 ~ 38897681 (+)
G352340 NA other downstream 124559 41210247 ~ 41210998 (+)
G352341 NA other downstream 125425 41211113 ~ 41214206 (+)
G352477 NA other downstream 280513 41366201 ~ 41366607 (+)
G353125 NA other downstream 1038988 42124676 ~ 42125759 (+)
LOC118964483 NA other downstream 1234012 42319401 ~ 42328637 (+)

Expression


Co-expression Network