LOC110522641 (LOC106608294)


Basic Information

Item Value
gene id LOC110522641
gene name LOC106608294
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41648792 ~ 41651426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976355.1
CATGCGAACTGTCAAAGTCGGTAGTCAAACTTTTCGCAGCAGAAGAGAGATACTGTAACAAACGAAAGAGACATCAGCTAACCTGCCAAAAGGATCACTTGACTTTGACAGCTTTAGCCGAGGCTTACTTTCGTTTCACTTGATTTGGAATTTTATCGAGTTTCTTCGTGATCTCCTGAAACGATGATGTACTCCGCTTTCAACACCGATTGTGACTCTTCTTCTCGCTGTAGTACAGCTTCTCCATCCGGCGACAAGCTGGTTTACTTCAACTCTCCTGAGGGATCCTACTCCAGCATGGGCTCTCCCCAATCTCAGGACTTCACAGACCTGAATTCAGTGTCCAGTGGTCCGTCCTTCATCCCTACTGTTACCGCCATCTCTGCCAGCCCAGACCTGCAGTGGTTGGTCCAGCCGCTATCCTCTGTGGCACCTTCTTACAGAGCCCATCCCTACAGTGCCAGCCCCCCAACCTACACtagagccatgaggaacaagGGCCACAGCTCTGGGCGCAGAGGCAAAATGGAACAGcTTTcgcctgaggaggaggagaagaagcgaGTCCGTAGAGAGAGGAACAAGCAGGCAGCAGCTAAATGCCGCAACAGGAGGAAGGAACTCACCGACACTCTGCAGGGTGAAACTGACGAGCTGGAGGACGAGAAGTCCGCTCTCCAGAACGACATCGCCAACCTGCTCAAAGAGAAGGAGAAGTTAGAGTTTATCCTGGCAGCCCACCAGCCCATCTGCAAGATCCCCTCTGATATGGACACGactttcccctccatctctccctcccatgGGGTCTCCATCCAGCTGTCCCCACCACAGAGCATGGTATCCAGCTCTGCCGCTCCCCTCGCCTCCATCCAGTCCACCTCCACCCTCTCAACCTCTGCCTCCATGTTCTCCGGCAGTCCCTTCCTGTCCACTGTCTCCGACGTCAAGATGGCCGACCTGGACACAGCCTGCCTGGAGTCCCTGTCTCTCCTCGTCAAGACGGAGATGGAGACGGCCCGGTCGGTGCCCGAGGTCGATCTGACCAGCTCCCTGTACACCCAGGACTGGGAGCCTCTCTACAGTACAGCCAATAATGACTTTGAGCCCCTGTGCACCCCTGTGGTCACCTGCACCCCATCCTGCACTACCTATAAGTCTTCATTTGTCTTTACCTACCCAGAGGCTGAGGCTTTCCCTACCTGTGGTGTAGCACACCGGAGAGGCAGCACCAGCAATGACCAGTCCTCTGATTCCCTCAGCTCCCCTACCCTCCTAGCCCTGTGAGGAGAACTTCAAGTTGCGTtacccaaatggctccctatatagtgcactgcttctgGCTCTGGTCAAACGCAGTGCACttggggacccccccccccctccccctcttccacacAACACGACTTCCTCTAGAGCACATTTGGCACTTCATGTacagtgatagatgtgcagaatgATCGCAGGGCTATGGACTTGGACACACAACCAGGAAGCCGAcacatttgatttgtttaccaagtTGTCTCGACTATAATCGGTTATTACTTGCCTCTTTCAACTATGTAGCAAGTTAAAGCATGTTTAACTTATAACACAATAGTTTGGGTTTACAAACCGTATATTGATTTTATGGCTCTAGATAACAAAGTTGTTGACTTGTTCTTCAGCGCAATATAGTTATCTTGACCGGTTTTGTTTTCTGGTTGATGGAATGTGAActtgtttgtggtgtgtgtgtgtatgtatatatatatattacacacacatgaTGCGCTTCTCTAACCATGGTCTGAGTGGTCTATCTTAGTATGAGAGTTTTCTGTGAAAACGTTAGTATTTAatttattacatgtatttaaatgAACTACAAAGCAAACAACCTTTGTAAACCTAACAAATAAAAAGGAAATGAAATATTTAAAAATA

Function

NR:

description
proto-oncogene c-Fos-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04379 FOS; proto-oncogene protein c-fos

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976355.1 True 1929 mRNA 0.50 3 41648792 41651426

Neighbor

gene id symbol gene type direction distance location
LOC110522636 LOC106608297 coding upstream 203524 41426880 ~ 41445268 (+)
LOC110521114 LOC106608298 coding upstream 563104 41071482 ~ 41085688 (+)
LOC118964399 LOC106608301 coding upstream 607753 41038237 ~ 41041039 (+)
abcd4 abcd4 coding upstream 703788 40918240 ~ 40945004 (+)
LOC118964481 NA coding upstream 707825 40940631 ~ 40940967 (+)
LOC110522642 LOC106608292 coding downstream 13176 41664602 ~ 41675680 (+)
LOC110522643 LOC106608291 coding downstream 24835 41676261 ~ 41681946 (+)
LOC110522644 ptk2b coding downstream 232839 41884265 ~ 41934580 (+)
LOC118964483 NA coding downstream 667975 42319401 ~ 42328637 (+)
eif2b4 LOC106608321 coding downstream 678316 42329742 ~ 42364354 (+)
G352644 NA non-coding upstream 29909 41618405 ~ 41618883 (+)
G352637 NA non-coding upstream 39482 41607985 ~ 41609310 (+)
G352620 NA non-coding upstream 70101 41577575 ~ 41578691 (+)
G352591 NA non-coding upstream 114244 41534116 ~ 41534548 (+)
G352574 NA non-coding upstream 118072 41530331 ~ 41530720 (+)
G352679 LOC106608275 non-coding downstream 39456 41690882 ~ 41691650 (+)
G352678 LOC106608275 non-coding downstream 41972 41693398 ~ 41705825 (+)
G352677 zc3h14 non-coding downstream 51128 41702554 ~ 41703383 (+)
G352889 NA non-coding downstream 128230 41779656 ~ 41779863 (+)
G352898 NA non-coding downstream 134397 41785823 ~ 41786631 (+)
G352477 NA other upstream 282185 41366201 ~ 41366607 (+)
G352341 NA other upstream 434843 41211113 ~ 41214206 (+)
G352340 NA other upstream 437794 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 658287 40990159 ~ 40990505 (+)
G351441 NA other upstream 1512019 40134687 ~ 40136773 (+)
G353125 NA other downstream 473250 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 791329 42442755 ~ 42443381 (+)
G353339 NA other downstream 799606 42451032 ~ 42451409 (+)
G353820 NA other downstream 1259460 42910886 ~ 42912213 (+)

Expression


Co-expression Network