LOC110522644 (ptk2b)


Basic Information

Item Value
gene id LOC110522644
gene name ptk2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41884265 ~ 41934580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976367.1
AGCAAACACCTTCCTGCTCTACATACACTTCTTCTTCGAGGGAATACCTGGTAATACCCAAAGGACTAGGCCTTATAGCGCATCTACCAGAAATACAATATCAACTTTTCCGTGCAGATGCTTGTGGGGTGACAAGTTCTCAAATTAGGTATGATGACAGTATGACGTTGTCCTCCTCTCTGCCCTGATAATGTACGAGGTGATGCAGGGAGACACTACCACCCTGTCCTGGAGGCTACCCAGCCCCGGCCACAACGACGGCCCACAACAGAGCCCCTTCAGCGGGGAGGGAGGACCTACTAAGATCCTTAAAGTTTGTTtctccaccaacaacaacaccctGGGGAAGAACTTCAAGCTGGTCAAGTGTGACAGCTCCTGGCAGATCAGGgctaTAGTCCAGTCTATCCTGACCAGTGGTAGACTGGGACCTAACATCCAGTATAAAGGCTGCTATGGTCTGCTGCTGAAGCACCTCAAGTCAGACGAGCTCCACTGGCTCCATCCAGACCTGACTGTGGGGGAGGTGGAGCAACGCTATGAGAGTCATCACGTGGAGGCAGAgtggagGTATGACCTGAGAGTCCGCTACATTCCAGTCAACTTCCTGGAAAAGTTTAAAGAAGACAGAACCACATTTCTGTATTTCTATCAACAGGTGCGTAGTGACTACATGCAGTACCATGCCAGTAAAGTCAGTGATGGAATGGCCCTGCAGCTGGGATGTCTGGAGATCAGGAGGTTCTATAAAGACATGAATGCTAAAGGCCTGGAGAAAAAGTCCAACTTCGAAGTGTTAGAGAAGGACGTGGGGCTGAACCTGTTCTTCCCACAGGAGCTCATTGACAGCATGAAGTCTCGTCATCTTCGTAAGATGATCCAGCAGACGTTCCAGCAGTACGCTACTCTGAAGGAGGATGAGTGTATGGTTAGCTTCTTCCAGACACTCACCGATTTCATCACCATCGGCGAAGAGGTCTACCCTTGTGAACTGGTGCAAGGCTGGAGTCTGTCAGTAGAGCTGGTGATAGGAGCCAGGGGCATTCGCCAACGCACCCATAAAGACTCAGCGCCTGTGTGTCTAGCGAACTTCAAACAGATCAAGAGCATCAAGTGTTTATCTCAGAGTGACAACAAAGCCCTCCTCAATCTTGACATAGACGGAGCCAGACAGCCTCTGTCTATCAACGTGACTAAGTTTGCGATGGCAGAGAACATGGTGGATCTTATTGACGGTTACTGTCGTTTGGAGCACGCCACTGACGAGTCGTTCATCGTCAGACCTGACAAAGACGCCAATCTACGATGTTCCCTTCCAGATCTGCCCACAAATCAAATGGAAAACACAGGTTGCTTCAGATATAGCATGGGATCTGAAATCTACGCTGAGATTGATGAACGACCAAGGTCTGTGGTGAAATATGGAATCGACAGAGATGACATTGTTCTGGGACGGATCCTTGGCGAGGGTTTTTTCGGGGAGGTCTATGAAGGAATGTACAAGAAATCGAATGGCGAGAGGCTAAGTGTGGCGGTGAAGACCTGTAAAGACTGTTCACCTGACATCATGGAGAAGTTCATGAGTGAAGCAGTGATCATGAAGAACCTGAAACACCCCCACATCGTCAGTCTGATCGGTGTCATAGAGGAAGACCCAGTGTGGATTGTCATGGAGTTATACCAGTATGGAGAGCTGGGAAAATACCTAGAAGAGAACAAGCACAAGCTGACCAACATAACGCTGGTCCTCTTCAGCCTGCAGATCTGTAAAGCTCTGGTCTACCTGGAAGGAATCAACATGGTGCACAGGGACATAGCGGTGAGGAACGTGCTGGTGGCCACAGCAGACTGTGTTAGGCTGGGAGACTTTGGTCTGTCCAGACACATCGAGGATGAAGAGTATTACAAGGCCTCAGTGAGCCGATTACCTATAAAATGGATGGCTCCAGAATCCATTAACTTCAGACGCTTCACAACGGCTAGTGATGTCTGGATGTTTGcGGTGTGTATGTGGGAGATCCTGAGTCGAGGGCAGCAGCCTTTCTTCTGGTTGGAGAACCGTGACGTCATCATTCAGCTGGAGCAAGGCATCAGACTACCCAAACCTGACGACTGCCCTCCTGCCCTCTACTCCCTCATGACACGCTGCTGGTCCTACAACCCCCGCGAGAGACCCTCTTTCACAGAGCTGGTCGTTAAGATCAGTGACGTCCATCAGATGGAGAAGGAGCaggaggcagagcgagagagggacagaaaacgCCCCATCCTGTTCTTTGACACCAAGTTCAAATTCAACGAGCCTCCTCCTAAGCCCTCCAGGATGAAACCTGGGGGTCGTTTTGGTAACAATATTGGCCTGCACGTTCAGCTGAATGAGGCCCTGTGTGCCAGCTCTCCAGACCTGGTCAGTCCCTGTGAATACACCACTGTTGTAGATTCTAGGAGCAACACAGTGGTCGTGCCCATGATGTCTCCACGACGATGCAGCATGGGGGAGGGTGAGTTCATTGTGGAGCCGTCCAGTAAGGAGGACGCCCAGCGATTgtggcagatggagagagagcgtaTGCAGGAGACGATGAGACAACAGAAACAACAGATGATGGAGGACAACAAGTGGCTGACCAAGGAGGAGAGACTCCTGGATCCCATGAGACAGGAGGATGCCACCAGCCCACTGTCACCTGAAGCTGAGACTGGACATGCCGCGCCAGACAAGCCCCCACGTCTCACGGCCCCCACAGCCCAGGCCGCCCCCACAGCCCAGGCCGCCCCCACAGCAGAGCTGGACCGGTCAGGTGACCAGGTGTACCAGGCGGTCATGGAGCTGGTCAAGGTGGTGGTGCAGTTGAAGAACGATGTCAACACACTACAGCCTGAACAATACATCAACATAGTGAAGtctgTAGGGTTGACCTTGCGGAGTCTGATCCACAGTGTGGATGATATTCTACCTACCCTGCATGAATCCATCAGGACAGAgATCGAGGGCACCCAGAAGCTGTTGAACAACGACATGTCAGAGTTGATCAGTAAGATGCGTCTGGCCCAGCAGAACGCCGTCACCTCGCTGAAGGAAGAGTGTAAGAAACAGATGCTGACTGCAGCACACAACCTGGCCATGGatgggaagaaccttctggatgCTGTGGACCAGGCCAGGGTCAGGGCCAACCTGGCCAAGCCCAAACCGGGAGACCCCATAGTGGGGTAAATacccacagccccccccccctcctctgatTGGATGATTTACaagtgtgttgtttttttttgttttgtcttcattggAGGACAGGTCAGAACCAAGCATGTTGCGACTGATTGGATGGACATCAGTGACTTGCAGGTACAATAGTCGAGATAAGTGGCATCAATATGACTGGCATCAACATGACTGGCATCAATATAACTGGCATCAATATGACTGGCATCAATATGACTGGCATCAATATGACTGGCATCAGTATGACTGGCATCAATATGACTGGCATCAATATAACTGGCATCAATATGACTGGCATCAATATGACTGGCATCAGTATGACTGGCATCAATATGACTGGCATCAATATGACTGGCATCAATATAACTGGCATCAATATGACTGGCATCAATATAACTGGCATCAATATGACTGGCATCAATATGACT

Function

symbol description
ptk2b Enables non-membrane spanning protein tyrosine kinase activity and protein C-terminus binding activity. Involved in several processes, including cell surface receptor signaling pathway; positive regulation of signal transduction; and regulation of cellular protein metabolic process. Located in several cellular components, including focal adhesion; lamellipodium; and perinuclear region of cytoplasm. Implicated in breast cancer and hypertension. Biomarker of glomerulonephritis and prostate cancer.

NR:

description
PREDICTED: protein-tyrosine kinase 2-beta

GO: NA

KEGG:

id description
K05871 PTK2B, FAK2; focal adhesion kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976367.1 True 3657 mRNA 0.51 29 41884265 41934580

Neighbor

gene id symbol gene type direction distance location
LOC110522643 LOC106608291 coding upstream 202319 41676261 ~ 41681946 (+)
LOC110522642 LOC106608292 coding upstream 208585 41664602 ~ 41675680 (+)
LOC110522641 LOC106608294 coding upstream 232839 41648792 ~ 41651426 (+)
LOC110522636 LOC106608297 coding upstream 438997 41426880 ~ 41445268 (+)
LOC110521114 LOC106608298 coding upstream 798577 41071482 ~ 41085688 (+)
LOC118964483 NA coding downstream 384821 42319401 ~ 42328637 (+)
eif2b4 LOC106608321 coding downstream 395162 42329742 ~ 42364354 (+)
LOC110522651 LOC106608319 coding downstream 436240 42370820 ~ 42433129 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 525778 42460358 ~ 42514461 (+)
si:dkey-71h2.2 LOC104922452 coding downstream 587206 42521786 ~ 42630516 (+)
G352951 NA non-coding upstream 15726 41868277 ~ 41868539 (+)
G352941 NA non-coding upstream 49808 41834179 ~ 41834457 (+)
G352939 NA non-coding upstream 53000 41830763 ~ 41831265 (+)
G352932 NA non-coding upstream 60093 41823966 ~ 41824172 (+)
G352930 NA non-coding upstream 61308 41822169 ~ 41822957 (+)
G352981 NA non-coding downstream 7965 41942545 ~ 41942800 (+)
G352982 NA non-coding downstream 9942 41944522 ~ 41944724 (+)
G352985 NA non-coding downstream 14852 41949432 ~ 41949638 (+)
G352986 NA non-coding downstream 20178 41954758 ~ 41955098 (+)
G352988 NA non-coding downstream 32062 41966642 ~ 41966841 (+)
G352477 NA other upstream 517658 41366201 ~ 41366607 (+)
G352341 NA other upstream 670316 41211113 ~ 41214206 (+)
G352340 NA other upstream 673267 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 893760 40990159 ~ 40990505 (+)
G351441 NA other upstream 1747492 40134687 ~ 40136773 (+)
G353125 NA other downstream 190096 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 508175 42442755 ~ 42443381 (+)
G353339 NA other downstream 516452 42451032 ~ 42451409 (+)
G353820 NA other downstream 976306 42910886 ~ 42912213 (+)

Expression


Co-expression Network