LOC118964482


Basic Information

Item Value
gene id LOC118964482
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41990396 ~ 41995133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051545.1
cctactTCCTTCCtactcttcttccctccctcctactctttttctctccctcctactcttcttccctccctcctactcttcttccctccctcctacgcttctccttccctccttcagGCTACTAATACAACCTTCAGCATCTGTGTCTCTCGTCAAAACCTAGAGGTGTGTAGTTTCTCTACTAAACAGATGCTCTGACAGGAATGTTCTTTCTGCTCAGTGTACTTTAAGTGAACCGTGAGTGTGCTGACAGCTATGGAATAAATGGTGGAGGATTTATGCTGAGATTTTGGACCACAGATTTGTAATGAAcagtcactgtactgtactgtaccgtaGCTGTTTCATACAGTAGCACTCATGTGTGACCAAACGCTGTCAAAGACAAAATGCCAAGTCAGTACTTTTTCtgtttacaaatattccaaaaaaCATTAAGTTGTTCATACTGAGCAGTTCAGctactctttttctctctctcctacttccttcctactcttcttccctccctcctactcttcttctctccctcctactTCCTTCCtactcttcttccctccctcctactcttcttctctccctcctactTCCTTCCtactcttcttccctccctcctagtctttttctctctctcctacttcctTCCTACTCTTCTTTATATCATAGTATGTCATGTATTTCAAAACAGATTTTCCATCCAGTAAATTGCTATTATTactgcatttaaaaaaacataaacaaatatgTCAGTCGGAAGTTTTGAAACCAAATATATTTGGTTACGACCCAAACTGCATTTTATTCCCTGTttggtgcactactgttgaccaaggCCCTATTCAGAAGGGCACTATATCAGGAATAGGGTGGAATTTGTGACACAAACTATATTTCTGTCATAGTAGTACCGGCAGCTCTGGTTAGCCTGAGTATTATGGGACATCTTTATTGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATCGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATCGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTACGTACCAGGGTAGTATGGTCTGTCTGTATCGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTACGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTACGTACCAGGGTAGTATGGTCTGTCTGTATCGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTACATACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTAGGTACCAGGGTAGTACGGTCTGTCTGTATTGGTCTGTCTAGATACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGTCTAGGTACCAGGGTAGTATGGTCTGTCTGTATTGGTCTGGGTAAGGGTGGAGACCAGAACAAGTTCAGGGCAGATGCTTGAAGGGAGGTTCCCCTCTCTTGTTCTATGAAAGCGGAACCCTGGAATACACACTGATCATCATTATGTTTCTCTGTTGTTTATCAGTGAAAATACACAAATGCAATTAGAGTGATATTCAGCTCAAATTCCAGGCTTGAAAACCAAAGGGTTTATTTGCAAATAAAGGGAATTGTATACAAGTACAATGAAGCTTGGTCTAGCTGGGTTATATTTGAGATGGGGTATGTTATGCTGTGAGGGAAATATGTTTTTcagagacatactgtatgtattgtatgcAGTGAGTTGGTGAGGAAAGGGGCAGCCAGGCCGGGGTGATTGTGACTTTGACCCCCATTCCTTGTCAGAGTTCAAACGACAACCCCATGCTGTCGAATGGGTTGGAAACATAGGGTACATCCTAAATGGCAGCCTAgttcctatataatgcactactttatggcaccctattccctatatagcgcactactttggaccagggcccaagtatagagtgctatttggtatgGACCTATACACAGCCCTGATCTGAAGTATACAAAACAAATGAGGTGTTATATAGATGGGTTCCACTGGGGTAATGTTGTGTAAGGTTACAGGGGGTAATGATGTGTATGGTTACAGTGGGTAATGTTGTGTAAGGTTACAGGGGGTAATGCCGTGTAAGGttacagggggtaatgttgtgtATGGttacagggggtaatgttgtgtATGGTTACAGGGGATAATGTTGTGTATGGTTACATGGGGTAATGGTGTGTATGGTTACAGGGGGTAATGCTGTGTAATGTCACAGGGGGCAATGCTGTGTAATGTCACAGGGGGCAATGTTGTGTATGATTACAGGGGGTAATGCTGTGTAAGGTTACAGCGGGTAATGTTGTGTATGATTACAGGGGGTAATGCCGTGTAAGGttacagggggtaatgttgtgtATGGTTACAGGGGGTAATTCTGTGTAAAGTTACAGGAGGTAATGTTGTGTATGGTTACAGCGGGTAATGTTGTGTATGGTTACATGTGGATAATGTTGTGAATGAttacagggggtaatgttgtgtATGGTTACAGGGGATAATGTTGTGTAAGGTTATCGAGGGTACTGTTGTGTATGGTTAAAGGGGGTAATGATGTGTATGGTTACAGGGCATAATGTTGTGTATGGttacagggggtaatgttgtgtTTGATTACAGGGGGTAATGCCGTGTAAGGTTACAGGGGATAATGTTGTGTAAGGTTATCGAGGGTACTGCTGTGTATGGTTAAAGGGGGTAATGATGTGTATGGttacagggggtaatgttgtgtATGGTTACAGGGGGTAATGCTGTGTATGGTTAGCGGGGGTCATGTTGTATGGTTACAGGGGGTAATGATGTGTATGGTTACAGGGGGTAATGCTGTGTATGGTTAGCGGGGGTCATGTTGTATGGTTACAGGGGGTAATGATCTGTATGGttacagggggtaatgttgtatggttacagggggtaatgttgtaaAGGAAACATAGTACTACCACGAGATGGTGGGGAGGCCATGCTGGTTATTGCCTGAGTTACTTTGACCCCCGTCCCTTTAAAAGGTCAAACAACGACATGAGATTATTAATCTCCTAGTCCGGCTCAGTGGGAGTTTCAACTTTAGTGTATATCAGTTTCTGTTCTGTCCCTAGTTCTCTTTCTGTTGTAGaaagatgtactgtatgtacttgtTGTTGCAGTCTTTTATGGGAGATGCCATCACCCTTTCttttttaggatgtttttaacgtTGTAATTATGAAACGATAAAGATAAAACATGTTATGTCAAAATGCAGTGAAAATTTTAactaaatgtaatcgaaaatgtaATCTACGTAATccccaaaagtaattatttatcatgagagggccataaaTATTAACTAGTGATGCTGCATATTCGTAGAAAGGTTCAAATCTCACCTTTTTGGTAAAAATGGTTATAAATTGCTGAGTtgtagtcacttttgaggacacaagctcaagtacacagtacaaatatgatacATATTTTATATTACGTCATTCCTTTTCAACAAAACTATATGAATAAGTCTTGACATGACTTATATGCTTTGTAAATATATTATAATCAAATTATGAAACAACTAAGTATAagatttcaccttccttataactgtaaaatacaattattttagaTGAACGGTTATAAATCAATCTCTGACGaaaccactctctcctgctgTGCTACGATGTCAGGGTTTCCGACATATGTTTTGTCAGTTGTTTGTGACGTAGGGTTCAGCCGggagttgatggacagtcggAAGAGCGAATTAAAATGGTGGGAGGGACATCCCAGCGTCAAGTGGTTTCAGATTTCACATCCACATCCAGGCTCAGACAATATACTACTGTGTCCGTGGGAACAAGGACTGTCGTTCACAGCAAGCCATttccaattcaattcaattcaattcaagggctttattggcatgggaaacatgtgttaacattgccaaagcaagtgaggtagataatatagaaagtgaatatataaagtgaaataaacaataaaaattaacagtaaacattacacatacagaagtttcaaaacaataaagacattataaatgtcattttatatatatacagtgttttaacaatgtacaaatggttaaaggacacaagataaaatgaataagcataaatatgggttgtatttatcttcactggttgcccttttcttgtggcaacaggtcacaaatcttgctgctgtgatggcacactgtggaatttcacccagtagatatgggagttccaTCTAAGTTGTCTACAGATCGATTTATAAGCAAAAATGTTGGTTGGAACCGGTCCCAGGACAATGCATTTCCCCCAAACAGGGGACTTTACATCAGTATAGGCCATATATTTatgttactgttgttttatttaatccagaTGAAAATAAAGTTGTATctaaaata

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051545.1 True 4698 mRNA 0.41 2 41990396 41995133
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110522645 LOC106571024 coding downstream 584 41935129 ~ 41989812 (-)
LOC118964501 NA coding downstream 148619 41840249 ~ 41841777 (-)
zc3h14 LOC106608275 coding downstream 284559 41686044 ~ 41705837 (-)
LOC110521119 LOC106608293 coding downstream 347225 41638027 ~ 41643171 (-)
LOC110522639 LOC106608295 coding downstream 362223 41593794 ~ 41628173 (-)
si:ch211-142k18.1 LOC106608326 coding upstream 341 41995474 ~ 42037750 (-)
nme6 nme6 coding upstream 295918 42291051 ~ 42298455 (-)
LOC110522649 LOC106608320 coding upstream 370780 42365913 ~ 42370184 (-)
LOC110522652 LOC106608329 coding upstream 447034 42442058 ~ 42455926 (-)
fndc4a LOC106608330 coding upstream 682976 42678109 ~ 42755992 (-)
G353069 NA non-coding downstream 21828 41968287 ~ 41968568 (-)
G353068 NA non-coding downstream 22199 41967942 ~ 41968197 (-)
G353067 NA non-coding downstream 27447 41962749 ~ 41962949 (-)
G353065 NA non-coding downstream 33177 41956985 ~ 41957219 (-)
G353064 NA non-coding downstream 39209 41950733 ~ 41951187 (-)
G353078 NA non-coding upstream 19049 42014182 ~ 42025449 (-)
G353084 NA non-coding upstream 40641 42035774 ~ 42036457 (-)
G353091 NA non-coding upstream 60013 42055146 ~ 42055757 (-)
G353098 NA non-coding upstream 75713 42070846 ~ 42071379 (-)
G353081 NA non-coding upstream 76749 42071882 ~ 42072494 (-)
G352948 NA other downstream 147911 41842113 ~ 41842485 (-)
G352722 NA other downstream 307616 41543179 ~ 41686007 (-)
G352818 NA other downstream 378414 41611513 ~ 41611982 (-)
LOC110522638 LOC106608314 other downstream 403452 41577166 ~ 41586944 (-)
G352723 NA other downstream 461296 41527968 ~ 41529100 (-)
G353203 NA other upstream 154989 42150122 ~ 42150607 (-)
blk LOC106608341 other upstream 827454 42795327 ~ 42833921 (-)
LOC110522657 LOC106608338 other upstream 918660 42913317 ~ 42916945 (-)

Expression

LOC118964482 Expression in all Baseline Samples

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LOC118964482 Expression in each Bioproject

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LOC118964482 Expression in each Sample
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Co-expression Network