si:ch211-142k18.1 (LOC106608326)


Basic Information

Item Value
gene id si:ch211-142k18.1
gene name LOC106608326
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41995474 ~ 42037750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976371.1
tctctctctctctcccactctcaccTGTCCCCCCCATCAGATGTCAACTAGATTACTAGACTTTCCACCGCATAGAAAGAAATCATTGAGTTTCAGCTCTTTCTCCAAACATTTCTTCCCTTTCCCAGACCCAGACaagggcacacacacagaccggcGACCGACCACGCTATCTAGCCaaccattaagtgtgtgtgtgaggaagtgtgtgtggtttttttctttcttctttgAGTAGAAAGAATGAAGTAAGGAAAATAAGTTGGGTATTTGCGCTCTGTGCCTGTGTTTGATAACCCAGGATCCCTTTTAAAATCATTTCACTTGACGGTGAAACCTGGAAGTGGAAAGTTTATAGCTGTGAATAGTCGCAGGACTTGGggTTGCCATGGGGTGTTGGTGGTGCTGGCTACTGGTAACCTTGCTATGGGTTTCCACGATAACAAACCCATGCCTTGGCCAGAGTGGTGACAGTGGCGACTGGGGCTCTGGCTTCGATGTCTCCATGACGACCCTCAGCACCAACAACAACACGTCCTCCTCCCAGGAGCCAGGAGATTACCCTGCGGGGTCAGAAACAGAGACAAGAGCATCCTGGGTTAAAATACTTCCACCTAAGCCAGTGTTCCACTACAACACGGAGCCAGATGAGTGCTCCGTCCACTTCAGCACCAGTCAGGCTTCCGCCAGGCGCCTCAAGGCCCAGAGAGAAGAGTTGGCCTACCTGAAGGCTATACAGCATGGGAACCAGGCGGTGGTGGAGAACCTAGTCCAGTACATAGGAGCAGAGCTGGGGGAGGAGCAGCGCTATGAGGACGTCATCGAGGAAAACATAGTGGGCATCAGGGAGGAGCACCAGAGCTGTAACGGTGTAGTCCAGAAGGTGATGGAGGATCTGGAGGGACAGTTGGAAGGAGATGTACTGGAGGCTCTGACTGGGATACGGAAAATCAAAGAGGAGTCCTTGGCGTTCGAGGGCCTCTTCCAGGCAGCAGCAGACATCGCCATGAGGCTGGATACCTTGTCTCAGACCCTCCACGCCTCCTTCACCAAACAGCTCAAAGACTCTCTCAAAACGTTACGTCGCTAAGGAGATTGTCTGGTCTCAGAACTGTTTGTGCGGTCTCTCCAGTTCCTATGGTCTTTGCTGTGACTCTTttgtagcctggtctcagatatGTGTGTACAAGAGAGCACAAACAGCTATTGGACCAGTCAACTAAGGCCTAGATTAAATCAGATCAAGTGTAAAGCGGCGATAGCTGACACCCACATAGCTGATGCTTTGGCGGAGGTGTAACTGCGTAGGAGCTTGTCAAAAATTTGTTGAGCAGCAGCTCATGTGATCATTGTCATGAAGTTCAGAACAAGAAAGTATAGGTCATATAGGAATAATTACACTGAAACTAAAAAAATAATTCAATTAAGTAATGAAGATTTTATTAGCCTtatcgaggtgtagattacatctcaaaCGCCAGTGTTCGAAATTTCTCTGAGTGCGACTCCTCTGCAGCCAATTGCAATGTCCACTTTAGGTATAAATCTGggagccgcttgtggatttgacagttCTAATGCATTCCACCTCTgccaaaacaaccgctatgcAGATGTCTGCTAGCGCAGATCTGATGGAATCTAGCCCTAAGGAGAACTCTctactcttcatctctccctcctactcttcttccctccttcatgctcttcttctctccctcctactcttcactaggaaag

Function

NR:

description
uncharacterized protein LOC110522646

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976371.1 True 1740 mRNA 0.49 5 41995474 42037750
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118964482 NA coding downstream 341 41990396 ~ 41995133 (-)
LOC110522645 LOC106571024 coding downstream 5662 41935129 ~ 41989812 (-)
LOC118964501 NA coding downstream 153697 41840249 ~ 41841777 (-)
zc3h14 LOC106608275 coding downstream 289637 41686044 ~ 41705837 (-)
LOC110521119 LOC106608293 coding downstream 352303 41638027 ~ 41643171 (-)
nme6 nme6 coding upstream 253301 42291051 ~ 42298455 (-)
LOC110522649 LOC106608320 coding upstream 328163 42365913 ~ 42370184 (-)
LOC110522652 LOC106608329 coding upstream 404417 42442058 ~ 42455926 (-)
fndc4a LOC106608330 coding upstream 640359 42678109 ~ 42755992 (-)
LOC118964502 NA coding upstream 735922 42773672 ~ 42777781 (-)
G353069 NA non-coding downstream 26906 41968287 ~ 41968568 (-)
G353068 NA non-coding downstream 27277 41967942 ~ 41968197 (-)
G353067 NA non-coding downstream 32525 41962749 ~ 41962949 (-)
G353065 NA non-coding downstream 38255 41956985 ~ 41957219 (-)
G353064 NA non-coding downstream 44287 41950733 ~ 41951187 (-)
G353091 NA non-coding upstream 17396 42055146 ~ 42055757 (-)
G353098 NA non-coding upstream 33096 42070846 ~ 42071379 (-)
G353081 NA non-coding upstream 34132 42071882 ~ 42072494 (-)
G353162 NA non-coding upstream 35886 42073636 ~ 42164966 (-)
G353463 NA non-coding upstream 213346 42251096 ~ 42251437 (-)
G352948 NA other downstream 152989 41842113 ~ 41842485 (-)
G352722 NA other downstream 312694 41543179 ~ 41686007 (-)
G352818 NA other downstream 383492 41611513 ~ 41611982 (-)
LOC110522638 LOC106608314 other downstream 408530 41577166 ~ 41586944 (-)
G352723 NA other downstream 466374 41527968 ~ 41529100 (-)
G353203 NA other upstream 112372 42150122 ~ 42150607 (-)
blk LOC106608341 other upstream 784837 42795327 ~ 42833921 (-)
LOC110522657 LOC106608338 other upstream 876043 42913317 ~ 42916945 (-)

Expression

si:ch211-142k18.1(LOC106608326) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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si:ch211-142k18.1(LOC106608326) Expression in each Bioproject

Bar chart with 19 bars.
si:ch211-142k18.1(LOC106608326) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network