rps12 (rps12)


Basic Information

Item Value
gene id rps12
gene name rps12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 43286652 ~ 43291268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976399.1
AGACAGGCAGAATCATGACTACCTACTTCTCGGGTCCTCCTTCTGCCCTTAAATGAATGTCGCCGACTGCGTGACGTTCTCTTTTACCCACCGTCAGAGAGGAGATTGGAACTTTTAGGTCCCCCATCCATCGATAATCTACAATGGCCGAGGAAGGCATCGCTGCCGGAGGTGTGATGGATGTCAACACCGCTCTCCCTGAGGTGCTCAAGACCGCACTCATCCACGACGGTCTGGCCCGCGGTATCCGTGAGGCCGCCAAGGCGCTAGACAAGCGCCAGGCCCACCTCTGCGTCCTTGCGGCCAACTGTGACGAGCCCATGTACGTCAAGCTGGTGGAAGCCCTCTGCGCTGAGCATCAGATTAACCTCATCAAGGTCGATGACAACAAGAAGCTTGGCGAGTGGGTTGGTTTGTGTAAAATCGACCGCGAAGGCAAACCCCGTAAGGTGGTGGGCTGCAGCTGTGTTGTAATCaaggaCTATGGCAAGGAGTCTCAAGCCAAGGATGTGATTGAAGAGTACTTCAAGGCCAAGAAATGAGATGTCCGTTTTCAATAAAAGCTTGTGGAAATA

Function

symbol description
rps12 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS12 (ribosomal protein S12).

NR:

description
PREDICTED: 40S ribosomal protein S12

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02951 RP-S12e, RPS12; small subunit ribosomal protein S12e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976399.1 True 575 mRNA 0.53 6 43286652 43291268
Loading

Neighbor

gene id symbol gene type direction distance location
sh3bgrl2 LOC106608335 coding upstream 8337 43253892 ~ 43279017 (+)
si:dkey-71h2.2 LOC104922452 coding upstream 656136 42521786 ~ 42630516 (+)
si:ch211-278j3.3 LOC106608328 coding upstream 772191 42460358 ~ 42514461 (+)
LOC110522651 LOC106608319 coding upstream 853523 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 922298 42329742 ~ 42364354 (+)
tbpl1 tbpl1 coding downstream 412751 43704019 ~ 43722541 (+)
slc2a12 slc2a12 coding downstream 448995 43740263 ~ 43768983 (+)
myb myb coding downstream 793348 44084616 ~ 44110268 (+)
ppp1r14c ppp1r14c coding downstream 1018205 44309473 ~ 44336978 (+)
nbas LOC104962557 coding downstream 1110048 44401316 ~ 44700404 (+)
G353963 NA non-coding upstream 2804 43282041 ~ 43283848 (+)
G353940 NA non-coding upstream 5986 43279806 ~ 43280666 (+)
G353952 NA non-coding upstream 39749 43246663 ~ 43246903 (+)
G353950 NA non-coding upstream 54098 43232135 ~ 43232554 (+)
G353944 NA non-coding upstream 80571 43205564 ~ 43206081 (+)
G353968 NA non-coding downstream 3232 43294500 ~ 43294783 (+)
G353969 NA non-coding downstream 3742 43295010 ~ 43295264 (+)
G353970 NA non-coding downstream 8027 43299295 ~ 43300099 (+)
G353978 NA non-coding downstream 20705 43311973 ~ 43312920 (+)
G353979 NA non-coding downstream 21950 43313218 ~ 43318002 (+)
G353820 NA other upstream 374475 42910886 ~ 42912213 (+)
G353339 NA other upstream 835243 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 843271 42442755 ~ 42443381 (+)
LOC118964483 NA other upstream 958015 42319401 ~ 42328637 (+)
G354462 NA other downstream 319694 43610962 ~ 43611562 (+)
G354630 NA other downstream 698855 43990123 ~ 43990639 (+)
G354819 NA other downstream 1168425 44459693 ~ 44461991 (+)
G355413 NA other downstream 1683768 44975036 ~ 44975829 (+)

Expression

rps12(rps12) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1500.
End of interactive chart.

rps12(rps12) Expression in each Bioproject

Bar chart with 21 bars.
rps12(rps12) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60000.
End of interactive chart.

Co-expression Network