Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_022485 |
| gene name | nr4a1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 32149269 ~ 32194397 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| nr4a1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Predicted to be involved in cellular response to corticotropin-releasing hormone stimulus and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in axis; myotome; nervous system; and pectoral fin. Orthologous to human NR4A1 (nuclear receptor subfamily 4 group A member 1). |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0071376 | cellular response to corticotropin-releasing hormone stimulus | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0035259 | glucocorticoid receptor binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ko04010 | MAPK signaling pathway |
| ko04151 | PI3K-Akt signaling pathway |
| ko04925 | Aldosterone synthesis and secretion |
| ko04927 | Cortisol synthesis and secretion |
| ko04934 | Cushing syndrome |
| ko03000 | Transcription factors |
| ko03310 | Nuclear receptors |
| id | description |
|---|---|
| ZDB-GENE-040704-11 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Predicted to be involved in cellular response to corticotropin-releasing hormone stimulus and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in axis; myotome; nervous system; and pectoral fin. Orthologous to human NR4A1 (nuclear receptor subfamily 4 group A member 1). |
| ensembl_id | ENSDARG00000000796 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00044350 | False | 5310 | mRNA | 0.39 | 8 | 32149269 | 32194397 |
| TCONS_00044349 | False | 5188 | mRNA | 0.39 | 9 | 32149269 | 32194397 |
| TCONS_00044351 | False | 2945 | mRNA | 0.46 | 7 | 32151333 | 32157865 |
| TCONS_00044352 | False | 1767 | mRNA | 0.52 | 6 | 32152451 | 32156278 |
| TCONS_00044353 | False | 784 | mRNA | 0.53 | 2 | 32155787 | 32162810 |
| TCONS_00045038 | True | 748 | lncRNA | 0.48 | 1 | 32162434 | 32163181 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_022482 | NA | coding | downstream | 7949 | 32111318 ~ 32141320 (-) |
| XLOC_022484 | CU469363.1 | coding | downstream | 9311 | 32139843 ~ 32139958 (-) |
| XLOC_022483 | rprm3 | coding | downstream | 19655 | 32128399 ~ 32129614 (-) |
| XLOC_022481 | letmd1 | coding | downstream | 49163 | 32079046 ~ 32100106 (-) |
| XLOC_022480 | NA | coding | downstream | 141473 | 32006905 ~ 32007796 (-) |
| XLOC_022486 | grasp | coding | upstream | 5191 | 32199588 ~ 32236122 (-) |
| XLOC_022487 | dgkaa | coding | upstream | 43940 | 32238337 ~ 32304754 (-) |
| XLOC_022488 | rnf41 | coding | upstream | 114417 | 32308814 ~ 32334208 (-) |
| XLOC_022489 | NA | coding | upstream | 153602 | 32347999 ~ 32352704 (-) |
| XLOC_022490 | ankrd52a | coding | upstream | 167688 | 32362085 ~ 32390742 (-) |
| XLOC_022474 | BX927365.2 | non-coding | downstream | 394401 | 31754752 ~ 31754868 (-) |
| XLOC_022472 | BX927365.1 | non-coding | downstream | 431559 | 31693368 ~ 31717710 (-) |
| XLOC_022492 | NA | non-coding | upstream | 214381 | 32408778 ~ 32570699 (-) |
| XLOC_022493 | NA | non-coding | upstream | 264458 | 32458855 ~ 32461920 (-) |
| XLOC_022494 | NA | non-coding | upstream | 295769 | 32490166 ~ 32496144 (-) |
| XLOC_022495 | NA | non-coding | upstream | 301914 | 32496311 ~ 32536550 (-) |
