XLOC_022488 (rnf41)


Basic Information

Item Value
gene id XLOC_022488
gene name rnf41
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32308814 ~ 32334208 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044358
GTAGGCGCAGCAGCAGATTCAGTCTGACTTCATCCGCTCGGCTCAGGAAGAGAAATCAGCCATCTCTCAGTCAGATCCCTGCAAACACCACAGCATCCAAATCCAGATATCACATTAAGCTTCGGGGGAATCCTGCGATCTACGGGAACAGGGGGATGGTCGGTCTTGCACTGTAGGAAGATCGTCGTGTCCACCTGACACATGAGGACGTCTCATTGTACGGGGGTCATGAGGGCTGTGCTTTAGTAAGATATCAAAGGGTTCTGGTAATGTGCCATGGGGTACGACGTCACCAGGTTCCAAGGAGAGGTGGACGAGGATCTGTTATGTCCCATCTGCAGCGGGGTGCTGGAGGAGCCAGTGCAGGCCCCGCACTGTGAGCATGCCTTCTGTAACGCCTGCATCACGCAGTGGTTTGCGCAGCAGCAGATCTGCCCTGTGGACCGCACCGTGGTGACTCTCGCACACCTTCGCCCCGTCCCCCGCATCATGCGCAACATGCTCTCTAAGCTGCAGATCTCATGTGATAACGCCGGCTTCGGCTGCACGGCCACCCTTCGCCTCGACCAGCTGCAGTCGCACCTCAAAGACTGCGAGCACAACCCCAAACGGCCTGTCACGTGTGAGGAAGGCTGCGGGCTAGAAATGCCCAAAGATGAGATGCCCAATCATAACTGTATTAAGCACCTTCGCAGTGTGGTGCAGCAACAGCAGACCAAAATTGCAGATCTGGAGAAAACTGCAGCGGAACACAAGCACCAACTTGCAGAACAGAAACGTGACATCCAGCTCCTGAAAGCGTACATGCGAGCAATACGCAGCGCTAACCCAAATTTACAGAACCTGGAGGAGAGCATAGAGTACAATGAGATCCTTGAGTGGGTGAATTCTCTGCAGCCCGCACGCGTGACCCGCTGGGGAGGAATGATCTCCACACCTGACGCCGTCCTGCAGGCTGTCATCAAGCGCTCGCTAATCGACAGTGGATGTCCGCTGTCCATCGTCAACGACCTCATCGAAAACGCCCATGAGCGGAACTGGCCTCAAGGTTTGGCCACGCTGGAGACGCGGCAGATGAACCGCCGTTACTATGAAAACTATGTAGCCAAACGCATCCCGGGGAAACAAGCGGTGGTGGTCATGGCCTGCGAGAACCAGCACATGGGGGAAGATATGATTCTGGAGCCAGGTTTGGTTATGATCTTCGCTCATGGCGTGGAGGAGATCTTATAGTCTGTACATAGGTGGGTGCCAATAATGACAAGGGGTTTACAGAAACTGAACGAATCCCCCCTtcttaaaaaaaagatcaatttATTCCACTAAAAATATCAAAACCTCTTCGACAGTCGTTACCTCAAATCTTAAGAAAGAAAGACACGCTCTCTGCTTATTTGAGGACTTCCAGCATTCCCATTCTCTTTGCCTTAAAAGGACATTTTTCAAAAAGTGGACCCTAAAAAACAACTTGAAGCATTATCAGGGACGATGGTACACGTTTTAACTTTAGCGATCAGAAGGATTTGAAGTGATCTCTAATTTCCCCTTTAATGTTTATTTCCCTCTTGAGAGTAAGTAGACGTTACTCGCAGCTTTGGACGGCATAAAAGAGCAGTTAAGATTCTTGTAAATACAGATGATAAAGAAATATAGACAAATATACTATCTGTTCTTGTTCTAATAGAGTAGTGGACCTTTTTGCTGTCTTCATCTCGGTTTGCTGTTTAGAGTAGGGTGTTTTAGCTACCATgaatctcgtttttttttttttttttcgtttctttttttaaagagagcTATGATTAAAGTATGCTAGATAAAATGTCTGCTCGGTGTTTGCACTGTGTGGTGATTGGAAAAATAAGATAATGTCTTGAATCTCGTTTGGTGAAGATgtttgaaagaaagaaataacactgcaaaaaaaaatttcttacTTAAATTATAATCTcttactttttgtcttgtttctagtccaaatgtctaaaaattcttaaatcaagcaaaatataacgtcttgttttaagaaataatgtgtcaatattaagtaatttttttcttaaaacaagcaaaataatctgccaatggtgtaagaaaaataatcttgtttttccttttgacatatgAATTTTGCCCACtccgttggcagattattttgcttattttaaggaaaaactcacctaattttaacacattatttctgaaaacaagacattgttttgcttgcctagaaatgctttttgatttaagaatttttagatatttagactagaaagaagacaaaaaaagtaagaaaagcattttttgcgtGTGGAGAATATCTTTGATGGAAATCGGTTAactattgttttctttgtttcaaatcaagtttatttctataaataaatgtttttatttatttgttttattttattgtagtctGCTGGGATCActggcttttatttttattactggtCGGAACCATTTATTCCATTTCTTTCCTCCAgaacattttacttttttattctgGCATCACTGACTATCACACTAATATTGATTAGAATCCTCATATTTTTTAAGATCCCTTTTATTCCACTATGTGCAACTACAAAATTATTTTCCTTTGCTTTTGTTCCCCTCCAAAATcaattttttgaaaatatttttttacttttctactAACATTACAAGCTATCACACTATTATCGATCAGAAATaatagtgacttttttttttaaatggtctgAAAAGTTTCTAATCGACTGTGTGCAATTAGAAACTCTCCAATTTCAATGTAATATTTCTCcagaaataatgtttttattattattattttgtattattttctacTTGCTGTCAATTGAACCATAATATTTAGTTTTAGGGTGAACTCAAAGGTTATTTTCGAGATTTATCAAAACCATAAATTAATcgaatatataaaatattcaatgttaaaaacatgatGTCTCAACCATATCTGGACCTGTTTGCTGTGGTTAACATCCATCACGTGACACAAGTTTTCAAAACGACTAATTACAGAGAGATGGGACGgttgtatgtttgtgtatattgTGCAATTGATTCCTGAATAAGCGGtttaagagtttttattttgCCTATTTCACGTTCTTTCGTTGTACATAGTTGATTTCAGAATCGGTTTGATTTGTGTTGTATGACAGTTGTCTCTGCAACCAAAGTGTTTTATTGTGTTGTATGCACATCGTGCTTGCTTTTTCGTTACGTTGTTGATGATGTTCGCGAACACCGAAAATTTGAAATGTATCTTCAGAGCttttgtgcgtgcgtgtgtgttttgctTCTGTGTTACATAGACCTGAATGCTCAGTGCGTTGTTTACAGTAGCTTTTTCTGCAAATGTTGCTCAATAAGAGCTGAAAAACTAAGGACCCAGAATGTTTTACTCTGCAATATTCAGCCAGGTCTATGTGAACTAAGGAGAGATGTCTGTGAACTTTGCCTTATCACACTTCATTCGACACTCGACTGCATGATCGCTCTATAATGTGTCACATGGCTTCTCCGCACATCATCTCACAAAGACGAGGCATGGTAGTTTTTCACTTCTCGGTTCTTGACAGATGGGATCACTTTCTGCTAGGAAATGCCATTCATGAAATAATGGTTCGCTTTTTTTGTTGTTCATGCTCGCTGCATCATCTCTTATTGGACACGCAGGACTTTCTTGACTCTCAGGATTTATCATCTGATGTCAGGGATGAAATGTTCAAAGAGCTCATGTTTCCCGCTGCAGCGTTGTCCGTGGATGTGGCAttcttctatttgtttgtttgttttcgttGTCTTTTATTCTTGCTTTCGTGCTGTGGGTTACTGACAGAATATGAATAAATATCATTGATTTTGCAATATGA
>TCONS_00044359
ATCCAAATCCAGATATCACATTAAGCTTCGGGGGAATCCTGCGATCTACGGGAACAGGGGGATGGTCGGTCTTGCACTGTAGGAAGATCGTCGTGTCCACCTGACACATGAGGACGTCTCATTGTACGGGGGTCATGAGGGCTGTGCTTTAGTAAGGTATGAATGTTTAACCTGATTTATTGACAGAAAATTGACTTGTACTCCATTAATACCACTGTGCAAAACCTACTCGCTCTGATCATGAATATTACATTGAAGTCAGTTTTGTACACAATAGCTTTTGTTCTCTTTGGTTTGTTTTGACACAGATGTTGTTCCACATGTATAGATCGGTATAAAGCGTTTTTGATCTACAGCATAACAATTAATCTACTATTGAAATTATTCTGGTTAAGAATAGCTTACTTGTATGTTTTATATGCTTGAATAGTATTTGATTTATCCAATTGGTAATGTGAACACACCTAAGTGAAAAAGATAGCACTGCAATCtttgtaaattgtaattattttaggGAATATGTGTACATTTTGTAATGATaatttcagttttctttaaatgGGCAATTCAACCACAATTCATTTCCTTACCTTAGGCTAAATTTACATGACAACGATGTAACCAAAAATGGAAAAGTTTTTCCCTtgcatcaaaaa

Function

symbol description
rnf41 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endoplasmic reticulum tubular network. Is expressed in several structures, including germ ring; muscle; nervous system; neural crest; and optic cup. Orthologous to human RNF41 (ring finger protein 41).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0097191 extrinsic apoptotic signaling pathway biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0071782 endoplasmic reticulum tubular network cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04121 Ubiquitin system
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040426-2920 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endoplasmic reticulum tubular network. Is expressed in several structures, including germ ring; muscle; nervous system; neural crest; and optic cup. Orthologous to human RNF41 (ring finger protein 41).

Ensembl:

ensembl_id ENSDARG00000036831

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044358 False 3881 mRNA 0.40 7 32308814 32334208
TCONS_00044359 True 656 processed_transcript 0.36 2 32325967 32334114

Neighbor

gene id symbol gene type direction distance location
XLOC_022487 dgkaa coding downstream 4060 32238337 ~ 32304754 (-)
XLOC_022486 grasp coding downstream 72692 32199588 ~ 32236122 (-)
XLOC_022485 nr4a1 coding downstream 114417 32149269 ~ 32194397 (-)
XLOC_022482 NA coding downstream 167494 32111318 ~ 32141320 (-)
XLOC_022489 NA coding upstream 13791 32347999 ~ 32352704 (-)
XLOC_022490 ankrd52a coding upstream 27877 32362085 ~ 32390742 (-)
XLOC_022491 si:ch211-66i15.4 coding upstream 66598 32400806 ~ 32404029 (-)
XLOC_022492 NA coding upstream 74570 32408778 ~ 32570699 (-)
XLOC_022493 NA coding upstream 124647 32458855 ~ 32461920 (-)
XLOC_022484 CU469363.1 non-coding downstream 168856 32139843 ~ 32139958 (-)
XLOC_022480 NA non-coding downstream 301018 32006905 ~ 32007796 (-)
XLOC_022474 BX927365.2 non-coding downstream 553946 31754752 ~ 31754868 (-)
XLOC_022472 BX927365.1 non-coding downstream 591104 31693368 ~ 31717710 (-)
XLOC_022494 NA non-coding upstream 155958 32490166 ~ 32496144 (-)
XLOC_022495 NA non-coding upstream 162103 32496311 ~ 32536550 (-)

Expression


Co-expression Network