G312743


Basic Information

Item Value
gene id G312743
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 5558940 ~ 5587042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU354782
TGGGCCAAAGATACTTTTATTTCAGGTGTTAATAGCCATCTGCAAAAAGATTGCATTTGATACAAAATCCTTCATCACACAGATGAACTCATCTAACTTGTGCCACTAAACGTGTCGGGCAGAGTGCATTTTCTTGATGTAGTGAAGATTGTTTATGGAGACAAGGGGGAGATATTGGTGACGAGGTAAGAGGTTAGAAGGTTTGAGAGAGTGTGTTCACTTCTGGTCGGGCATCAGGTCGTTGAAGGACTGGCCGCTCTCCAGACGCTTCTCCATCTCGACGAGGGTCTTGACGCCGTCGACAACCATCTGCACCAGCTCCACCTCGGAGAAGCCCAGACGGTCTGCGTTGGAGATGTCGAAGACACCGCCTACTGCTGCAGTGTCCACAccacCTGTGCCACGCTTCTGCAGCCTCAACCTCTTGAGGACCTCGCTGAACTTCTCGTGCTTGCTCATGTTGGGCAGCTTGACGTGCACACCGGCGCGCAGCCCCGTGCCCAGGTTGGAGGGGCAGGTGAGCACGTAGCCCAGGTGCTCGTTCCACATGAACTCATGGCCCTTGTCCTTGAACAGGCTCTCAATCTGAAGTGGTCAGAGGAAACAGTGAGGTAAGGGACCAAAGGTTAGAAGTCGTGTTGAGAAAGCAACTGCAGTGTTGGGGGACTGTTTAAGTTAAACGTTTCCCCCAGTTTTTGCAACAGTTTTTGAAGTGCCATTTTGCATAGTAGACTCACAAATTGACTGCATTCAAATGTGATTAACCCCAGCAATGTAGTTTGCACATGTTCTTTAACATTACGTTGTAGAATTGAGCCTTGGGCTTAACATATTTGACACCCTAGAAAGCGGAGtgcacgtcacacacacaccttcgtgAGGCCTGTGCAGAAGCGGTGGAACACCTCCTTCATATTGCCGCCCTTCTGCATAGAGATGACCCGCAGATGGTCCTCCTCATTCACCCAGACCAGGAAGGTCTTGCCATCATTGTGCCTGTCAACAAAAACAAATCTACATATTAGTTCAACAcgcagcagcgcctcttcaacctcaggaggctgaagaaattcggtttgtcaccaaaagcacacaaacttctacagatgcacaatcgagagcatcctggcaggctgtatca
>TU354783
GGGGGAGGCAGAAGCCGCGGACACTCCTGCCAGTTCGCACTCTGGAGCTCAGGACGAAGTTGGGGTCCAGGTCATCCCCACCCACAAGGTTATCTGGGTTCAGGTCGGTCTTGTGTTTGTCTGAGGGCTTGTATCCGCCGTGGCGGTCTTCAATGATGGGGTCCAGCAGCTCCTTGAACACCTCGTACGTCTCCTCGTCTCCGGCCACACAGCCCACTGTCATGATGAAGGGGTGGCCTGGGTTATCAATTCCAGTTTGAATGACATCATCCACGGTAAATCCACTTGGAGTCTCTTTGTCCCGCAGGTTGGCGTACATCTCTGGGGTGAGCACCTTGGCCATGTGGTTGTTATGTTGGCTGAGGTCGGGGTACTCCTGCTCCGCGGAGTAGCTCATCTTCAGCTTGTTGTGGGTGTTACCGAAAGGCATGACTGCGTTCACCTGTGCGCAAGGATGAAACGATGAGGTGTCAGTGGCCAAGAGCCTAGACCCGGCAAAATGGAATAACTAATTGGAACAGGGTCTAAAAAGACTTGAGAAGTCACTGTACGCAATTGTGACGCAGTGGTCGGCTATTTCGACACCTGGTTTTGAGGTAGCAAACAAATTCCTGCCATTTGCGTGCCAATTCCTCATAATCTGAGAGGGTATACGCAACATACAATCGGTGCCCAAATATAGCAATTTATTTTCTCTAAAATATAAAAATGTCCAACAAAGGGAATGCATATTCATCCACGTTAATCCAAAATATGTCGGTTACAGTGCGAGGCAATACTGTTCACATTAGTCACATGCGTGATGTCCAGCACCAGATAAGACCTTGCAGATAGACCACGACCTTGCGGTCTCTTCCGTGTAAACGGCTATGCCAAACGGAAAATTACCCCTCTACACTAGTTGACGATTTTAACCAGGGTGAAATATTGTACATGTCAGTTCGATTTAATCGTTTTGAGTGGAACCAAATCACTGACGTCTCCCCATTTCTCTAGGGTTAGATGCGCTTTCCCGAGATGCTGTCTAAAAATACCCGTCTTTGTTCAGCCTATATTCCAAACGTTTTGCCATTATCATATAGCCTATTTAACC

Function

NR:

description
creatine kinase B-type

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU354782 False 1141 lncRNA 0.50 3 5558940 5565325
TU354783 True 1093 lncRNA 0.48 5 5570186 5587042

Neighbor

gene id symbol gene type direction distance location
LOC110521032 LOC106607643 coding upstream 6315 5417154 ~ 5552625 (+)
LOC110521987 LOC106607644 coding upstream 151041 5383999 ~ 5407899 (+)
LOC110521986 LOC106607645 coding upstream 181393 5367436 ~ 5377547 (+)
LOC110521985 LOC106607648 coding upstream 382224 5169550 ~ 5176716 (+)
LOC110521980 LOC106607654 coding upstream 659649 4860349 ~ 4899291 (+)
LOC110521990 LOC106607641 coding downstream 111204 5698246 ~ 5747594 (+)
LOC110521992 LOC106607639 coding downstream 200764 5787806 ~ 5808212 (+)
LOC110521033 NA coding downstream 254676 5841718 ~ 5842961 (+)
paplnb LOC106607636 coding downstream 288486 5875528 ~ 5908722 (+)
LOC110521994 LOC100699790 coding downstream 322339 5909381 ~ 5915171 (+)
G312719 NA non-coding upstream 15177 5466721 ~ 5543763 (+)
G312730 NA non-coding upstream 66780 5491199 ~ 5492160 (+)
G312659 NA non-coding upstream 222161 5335916 ~ 5336779 (+)
G312624 NA non-coding upstream 255643 5303043 ~ 5303297 (+)
G312613 NA non-coding upstream 258783 5291986 ~ 5300157 (+)
G312750 NA non-coding downstream 6127 5593169 ~ 5593515 (+)
G312757 NA non-coding downstream 15237 5602279 ~ 5602487 (+)
G312761 NA non-coding downstream 24540 5611582 ~ 5611820 (+)
G313115 NA non-coding downstream 85671 5672713 ~ 5673046 (+)
G313116 NA non-coding downstream 86150 5673192 ~ 5673457 (+)
G311283 LOC106561190 other upstream 802275 4242628 ~ 4756665 (+)
LOC118964419 LOC106603827 other upstream 1038772 4497914 ~ 4520168 (+)
LOC110521936 LOC106564406 other upstream 1284910 4267273 ~ 4276237 (+)
G311356 LOC106591448 other upstream 1335686 4190660 ~ 4223254 (+)
G315185 NA other downstream 1997869 7584911 ~ 7585265 (+)
G315188 LOC100380853 other downstream 2002864 7589906 ~ 7590403 (+)
G316000 NA other downstream 2617711 8204753 ~ 8205391 (+)
LOC110522026 dtl other downstream 2739079 8319746 ~ 8328498 (+)
LOC110522033 LOC106571210 other downstream 3151486 8738411 ~ 8802455 (+)

Expression

G312743 Expression in all Baseline Samples

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G312743 Expression in each Bioproject

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G312743 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network