G321227


Basic Information

Item Value
gene id G321227
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 12813601 ~ 12819677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU364014
ttcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgttgatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttccagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggagatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU364014 True 729 lncRNA 0.44 2 12813601 12819677

Neighbor

gene id symbol gene type direction distance location
LOC110522108 pm20d2 coding upstream 1224 12800778 ~ 12812377 (+)
pnrc1 pnrc1 coding upstream 15490 12794904 ~ 12798111 (+)
LOC110522111 LOC106607707 coding upstream 232552 12574316 ~ 12581049 (+)
LOC110522118 LOC106607706 coding upstream 248952 12560870 ~ 12564649 (+)
LOC110522117 smim8 coding upstream 264482 12548411 ~ 12549119 (+)
LOC110521046 LOC106607715 coding downstream 108438 12928115 ~ 12981592 (+)
LOC110522103 casp8ap2 coding downstream 214467 13034144 ~ 13045663 (+)
LOC110522121 gja10 coding downstream 227670 13047347 ~ 13049135 (+)
LOC110520969 fut9 coding downstream 965037 13784714 ~ 13785790 (+)
LOC110522126 LOC106607723 coding downstream 972307 13791984 ~ 13801419 (+)
G321201 NA non-coding upstream 38247 12774259 ~ 12775354 (+)
G321055 NA non-coding upstream 260765 12552601 ~ 12552836 (+)
G321054 NA non-coding upstream 261062 12552332 ~ 12552539 (+)
G321051 NA non-coding upstream 281969 12531393 ~ 12531632 (+)
G321045 NA non-coding upstream 290165 12523216 ~ 12523436 (+)
G321254 NA non-coding downstream 30595 12850272 ~ 12853113 (+)
G321256 LOC101472980 non-coding downstream 34243 12853920 ~ 12854586 (+)
G321323 NA non-coding downstream 146273 12965950 ~ 12966209 (+)
G321328 NA non-coding downstream 149413 12969090 ~ 12969309 (+)
G321330 NA non-coding downstream 153998 12973675 ~ 12973877 (+)
LOC110522079 LOC106607678 other upstream 1435845 11376071 ~ 11378586 (+)
LOC118964431 LOC106571213 other upstream 3350104 9447091 ~ 9472617 (+)
G317265 NA other upstream 3393272 9419418 ~ 9420329 (+)
G321447 NA other downstream 323270 13142947 ~ 13143443 (+)
G322645 NA other downstream 1030610 13850287 ~ 13885503 (+)
G325389 fabp7 other downstream 3615576 16435253 ~ 16436882 (+)
G327705 NA other downstream 5444613 18264290 ~ 18304442 (+)

Expression


Co-expression Network