G321228


Basic Information

Item Value
gene id G321228
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 12814251 ~ 12818852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU364017
gcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtgggttgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtagggcgtgcaaaattattcagcccccttaagttaata

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU364017 True 471 lncRNA 0.44 2 12814251 12818852

Neighbor

gene id symbol gene type direction distance location
LOC110522108 pm20d2 coding upstream 1874 12800778 ~ 12812377 (+)
pnrc1 pnrc1 coding upstream 16140 12794904 ~ 12798111 (+)
LOC110522111 LOC106607707 coding upstream 233202 12574316 ~ 12581049 (+)
LOC110522118 LOC106607706 coding upstream 249602 12560870 ~ 12564649 (+)
LOC110522117 smim8 coding upstream 265132 12548411 ~ 12549119 (+)
LOC110521046 LOC106607715 coding downstream 109263 12928115 ~ 12981592 (+)
LOC110522103 casp8ap2 coding downstream 215292 13034144 ~ 13045663 (+)
LOC110522121 gja10 coding downstream 228495 13047347 ~ 13049135 (+)
LOC110520969 fut9 coding downstream 965862 13784714 ~ 13785790 (+)
LOC110522126 LOC106607723 coding downstream 973132 13791984 ~ 13801419 (+)
G321201 NA non-coding upstream 38897 12774259 ~ 12775354 (+)
G321055 NA non-coding upstream 261415 12552601 ~ 12552836 (+)
G321054 NA non-coding upstream 261712 12552332 ~ 12552539 (+)
G321051 NA non-coding upstream 282619 12531393 ~ 12531632 (+)
G321045 NA non-coding upstream 290815 12523216 ~ 12523436 (+)
G321254 NA non-coding downstream 31420 12850272 ~ 12853113 (+)
G321256 LOC101472980 non-coding downstream 35068 12853920 ~ 12854586 (+)
G321323 NA non-coding downstream 147098 12965950 ~ 12966209 (+)
G321328 NA non-coding downstream 150238 12969090 ~ 12969309 (+)
G321330 NA non-coding downstream 154823 12973675 ~ 12973877 (+)
LOC110522079 LOC106607678 other upstream 1436495 11376071 ~ 11378586 (+)
LOC118964431 LOC106571213 other upstream 3350754 9447091 ~ 9472617 (+)
G317265 NA other upstream 3393922 9419418 ~ 9420329 (+)
G321447 NA other downstream 324095 13142947 ~ 13143443 (+)
G322645 NA other downstream 1031435 13850287 ~ 13885503 (+)
G325389 fabp7 other downstream 3616401 16435253 ~ 16436882 (+)
G327705 NA other downstream 5445438 18264290 ~ 18304442 (+)

Expression


Co-expression Network