G321254


Basic Information

Item Value
gene id G321254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 12850272 ~ 12853113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU364043
cgtatggtgaaaacactgaaacggaaaataaccacccacaaacagGAGTGAGAAAAccggctacctaagtatggttctcaatcacatagaaatataaacccaagaacaaaacatagaatgcccaccccaactcacgccctgaccaacctaaaatagagacatacaaaaggaactaaggtcaggacgtgacagaatGAGTTCGCCATATCACATGACATCTATGATGTTCAGTAGGTCAACCACTGGGCCTCACTTGATTGGTCAATGCTATATCAGGCATACCCTGCTGAAAGGGATATGTAAGCAATAGGCAACTGTACTGTAGCTCCATTATGTTACAATGTATTGTTGTaatatacactgactgtacaaaacattaggaactttccatgacagactgaccaggtgaaagctatgatcccacatggattgtgtatgtgtggcattcagagggtgaattggaaagacaaaatattgaagtgcctttgaatggggtatggtagtaggtgccaggagcacaccggtttgagtctgtcaagaactgcaacgctgctgagtttttcaggctcaacagtttcccgtgtgtatcaagaatgggccaccacccaaaggacatccagccaacttgggaagcattggagacaaagggggttgcaactcaatattaggaaggtgttcctaatgttttgtacacccagtgtaGAGACACATATAGCGGCTGTGTAGGTGGGGGCAGCTTAGACATTCTCACTGAGgctaatttaatttgatttgtttgtttGGGGATTAAATGTGCTATGAATGCTCTCTAAAATCTggattacagacagacagatgtacaTCACATGGCAAGATTGTCTCAGAAACACATTATTCTTAAAAGTGAATGCTGTATTTCCAGTCATCTTATCTCATAGTCCTTAGTAATGTTGCCTCATCCATAAGGAAACAATGACATAATCCAGCTAGGGTTGCAAAAGTCCAGCAGCTTTCCCAAAATTCACAGGTTTTCCCGAAATCCTGGTTGGAGAATTTCAGATTTCCTGCTTATCAGGGAATCTTCCAACTGggacttttttttaaagaatttggGAATTTTGAATTACTGGAACTTTGCAACCCTGCCTCCAGCAATTGAAAGATAACGGTTACAGACTTTTCTTTAGATTGAGAACAGGCAAGCAAAATATGTATGGTCACGACTCATGCTCAAACACATTGACTGCAAACATGCTTTTAGCTTAAAGCCTTTTATTTAGAAATCTGCTCAAAAAAAAAGCATACATTCTAAATGTTTTGACGCGACAATAATCAGTCTACAGTAGTTTTGCAAGCTTGTGGACAAGCATCTGTATGAGGTGATTTGCGTTGGTTGAGcatttgtccaacaggctgacaTATCTACAGTGGCAATATGGATGCCTAGTAAATCCAGCTCATGCTTGTGGCTATCTACACACTACATACAATACCATGTGTACTAATATACTGGTTGGATAGAATACTGGATATAAAAAGCAATATGCAGTCACTTGTAATCCAAACAGtcaatcaaacaaacaaacacaaaagaTTTCGCCGTGAAACCAGTTCACTTAAGGCTGTTCAAGTTCATTACATCGCTGATAAAGGTTTATAAGTCTCGAAAACCCCCTTCTGAGTAACATACAAACAGAAACAACTCTTTAATTGGTGGATAACATTGAGTTCCTGAAACAAGCTGAATGATAGTTCACATAAGCATTCATTAATGGTACCCACCCTCACAATTTCTGTGGCCAACCATGAAAAAACCTATTAAGCCCCATGCATTGTTTTTAACAACTTAAGGTATAATGGCATATTTAGTGCACTAAACATTTATTATGTAAGTAAATTGATAGGCctaaaatgaataaataattgAATAAATAGATcattaataaataataaaataaatactgaAATACTGTAATCTAAGTGAAAATCTGCCAGCTTGTATAAATGTAGATTTAGATTTTTGTGTGGTTTGTTCAATCATGATCAGCTGTTACAAAGAATAACACTTGGTGCATTCCTAGAAGACATAGAGTCTGTGGCTGCGTTTCAATTTGCTCATGAGCAACTGATGCTTGCCAAATCAACATAGTCGATTTTAAGAGGTCAAACCCTCACATTATGGATCAAGCTTTCTGTTTTCTGCTTAAGGACGGCAAGCTTGGGCAACACTTAGTCCATTTTTAGAAGTACGTATACTGTCAGTAATACAGACACAGTCTTACTGCTTTGACAGTGCCATGAGTATAAAATTCATCATAGTTTGTGCTTGGACCTGCATGGTTGCGTAAATAGTTTATATAGCAAAAAAAGGAAAGCTGTACAGTCAAGTAGTAACATGGTTGTAGCTGATGGTGGGGATAGAATGGTGTTATCCATCTAGAGATCTGTGAAAACCTTTTGTGAGTGCTGCTGGTGAGCACAGGTGTTATAAGAACTCCATCACCTCAATGTGCATTATGGAGGTCATTACCACTTTGAGTCAATCAGTTTTGTCGGTCAGAGTTAAATAACGGTCCTGTTTCATCTGGTACAGCAACATCAGTAGATTGTCTCTCTGCTGACTCTAACAAGGCTGTCCGGGAGAGCCTCAGCAGTACACAGACCAGTAGATGAGGTTGAAAATGATGTAGGATCCAGGAAAGATCATGCGGGAGTAGGTGTCAATGGCGTGGGTGTTCTGCATGAAACTGAAGCTGCGGAAGCGCGTCTTCTTCTTGGTTGCCGCCGTGGACTCGTTGTCCAAGGAGATGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU364043 True 2791 lncRNA 0.40 2 12850272 12853113

Neighbor

gene id symbol gene type direction distance location
LOC110522108 pm20d2 coding upstream 37895 12800778 ~ 12812377 (+)
pnrc1 pnrc1 coding upstream 52161 12794904 ~ 12798111 (+)
LOC110522111 LOC106607707 coding upstream 269223 12574316 ~ 12581049 (+)
LOC110522118 LOC106607706 coding upstream 285623 12560870 ~ 12564649 (+)
LOC110522117 smim8 coding upstream 301153 12548411 ~ 12549119 (+)
LOC110521046 LOC106607715 coding downstream 75002 12928115 ~ 12981592 (+)
LOC110522103 casp8ap2 coding downstream 181031 13034144 ~ 13045663 (+)
LOC110522121 gja10 coding downstream 194234 13047347 ~ 13049135 (+)
LOC110520969 fut9 coding downstream 931601 13784714 ~ 13785790 (+)
LOC110522126 LOC106607723 coding downstream 938871 13791984 ~ 13801419 (+)
G321227 NA non-coding upstream 30595 12813601 ~ 12819677 (+)
G321228 NA non-coding upstream 31420 12814251 ~ 12818852 (+)
G321201 NA non-coding upstream 74918 12774259 ~ 12775354 (+)
G321055 NA non-coding upstream 297436 12552601 ~ 12552836 (+)
G321054 NA non-coding upstream 297733 12552332 ~ 12552539 (+)
G321256 LOC101472980 non-coding downstream 807 12853920 ~ 12854586 (+)
G321323 NA non-coding downstream 112837 12965950 ~ 12966209 (+)
G321328 NA non-coding downstream 115977 12969090 ~ 12969309 (+)
G321330 NA non-coding downstream 120562 12973675 ~ 12973877 (+)
G321219 lyrm2 non-coding downstream 128665 12981778 ~ 12982330 (+)
LOC110522079 LOC106607678 other upstream 1472516 11376071 ~ 11378586 (+)
LOC118964431 LOC106571213 other upstream 3386775 9447091 ~ 9472617 (+)
G317265 NA other upstream 3429943 9419418 ~ 9420329 (+)
G321447 NA other downstream 289834 13142947 ~ 13143443 (+)
G322645 NA other downstream 997174 13850287 ~ 13885503 (+)
G325389 fabp7 other downstream 3582140 16435253 ~ 16436882 (+)
G327705 NA other downstream 5411177 18264290 ~ 18304442 (+)

Expression


Co-expression Network