G322423


Basic Information

Item Value
gene id G322423
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 13572159 ~ 13572890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU365290
cacatatggaatcatgtagtaaccgaagAAGCGTTAAACAACagtttagattttagattcttaaaagtagccaccctttgcctttgacagcgtTGCAgactctaggcattctctcaaccagcttcacctggaatgcttttctaacagttttgaaggatttcccacatatgctgagcacttggctgcttttccttccctctgcggtccaactcatcccaaaccatctcaattgctgaggctggtaactctaatgaacatatcctctgcagcagagggtctctctggttcttcctttcctgtggtggtcctcgtgagagccagtttcatcatagcgattgatcgtttttgcaactgcacttttccatattgactgaccttcatgtcttaaagtaatgatggactgtcttttctcttttcttatttgacctgttcttgccataatatgaacttgggtcttttaccaaatggggctatgttctgtataccacccctaccttgtcacgacacagctgattggctaaaacacattgcaaaggaaagaaattccacaaatgaactttaacaaggcacacctgttaactgaaatgcattccaggtgactacctcatgaagctggttgtgagaatgccaagaatgtgcaaagctgtcatcaaggcaaaggatggctgctttgaagaaaatatatttggatttgtttaacttctttggttactacatgattccatgtatgtt
>TU365289
cacatatggaatcatgtagtaaccgaagAAGCGTTAAACAACagtttagattttagattcttaaaagtagccaccctttgcctttgacagcgtTGCAgactctaggcattctctcaaccagcttcacctggaatgcttttctaacagttttgaaggatttcccacatatgctgagcacttggctgcttttccttccctctgcggtccaactcatcccaaaccatctcaattgctgaggctggtaactctaatgaacatatcctctgcagcagagggtctctctggttcttcctttcctgtggtggtcctcgtgagagccagtttcatcatagcgattgatcgtttttgcaactgcacttttccatattgactgaccttcatgtcttaaagtaatgatggactgtcttttctcttttcttatttgacctgttcttgccataatatgaacttgggtcttttaccaaatggggctatgttctgtataccacccctaccttgtcacgacacagctgattggctaaaacacattgcaaaggaaagaaattccacaaatgaactttaacaaggcacacctgttaactgaaatgcattccaggtgactacctcatgaagctggttgtgagaatgccaa
>TU365291
cacatatggaatcatgtagtaaccgaagAAGCGTTAAACAACagtttagattttagattcttaaaagtagccaccctttgcctttgacagcgtTGCAgactctaggcattctctcaaccagcttcacctggaatgcttttctaacagttttgaaggatttcccacatatgctgagcacttggctgcttttccttccctctgcggtccaactcatcccaaaccatctcaattgctgaggctggtaactctaatgaacatatcctctgcagcagagggtctctctggttcttcctttcctgtggtggtcctcgtgagagccagtttcatcatagcgattgatcgtttttgcaactgcacttttccatattgactgaccttcatgtcttaaagtaatgatggactgtcttttctcttttcttatttgacctgttcttgccataatatgaacttgggtcttttaccaaatggggctatgttctgtataccacccctaccttgtcacgacacagctgattggctaaaacacattgcaaaggaaagaaattccacaaatgaactttaacaaggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU365290 False 732 lncRNA 0.42 1 13572159 13572890
TU365289 False 631 lncRNA 0.43 1 13572260 13572890
TU365291 True 568 lncRNA 0.42 1 13572323 13572890

Neighbor

gene id symbol gene type direction distance location
LOC110522122 map3k7 coding downstream 374924 13173776 ~ 13197235 (-)
LOC110522120 bach2 coding downstream 421159 13052105 ~ 13151000 (-)
LOC110522101 mdn1 coding downstream 538062 12982926 ~ 13034097 (-)
lyrm2 lyrm2 coding downstream 589390 12981284 ~ 12982769 (-)
ube2j1 ube2j1 coding downstream 649557 12893185 ~ 12922602 (-)
LOC110522125 epha7 coding upstream 3 13572893 ~ 13647267 (-)
LOC110522127 LOC106607724 coding upstream 236858 13809748 ~ 13821911 (-)
LOC110522128 LOC106607726 coding upstream 252910 13825800 ~ 13827498 (-)
dse LOC106607725 coding upstream 256166 13829056 ~ 13858174 (-)
LOC110522132 LOC106607728 coding upstream 285294 13858184 ~ 13916995 (-)
G322421 NA non-coding downstream 66 13570476 ~ 13572093 (-)
G322426 NA non-coding downstream 5021 13565623 ~ 13567138 (-)
G322425 NA non-coding downstream 6743 13562978 ~ 13565416 (-)
G322291 NA non-coding downstream 52490 13519421 ~ 13519669 (-)
G322290 NA non-coding downstream 52793 13519127 ~ 13519366 (-)
G322563 NA non-coding upstream 149998 13722888 ~ 13723132 (-)
G322580 NA non-coding upstream 163078 13735968 ~ 13736179 (-)
G322732 LOC106607723 non-coding upstream 226359 13799249 ~ 13799623 (-)
G322733 NA non-coding upstream 250936 13823826 ~ 13871569 (-)
LOC110522115 LOC106571283 other downstream 1024642 12545954 ~ 12547517 (-)
G320883 NA other downstream 1253761 12318003 ~ 12318398 (-)
LOC110522088 LOC106607688 other downstream 1678586 11891326 ~ 11893699 (-)
G323167 prs27 other upstream 555599 14128489 ~ 14187171 (-)
G324432 NA other upstream 1680974 15253864 ~ 15255008 (-)
rnf217 rnf217 other upstream 2446538 16019428 ~ 16125180 (-)
G325696 NA other upstream 2766442 16339332 ~ 16340707 (-)
G325960 LOC106607776 other upstream 3073865 16646755 ~ 16662881 (-)

Expression


Co-expression Network