G324584 (arhgap18)


Basic Information

Item Value
gene id G324584
gene name arhgap18
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 15616049 ~ 15618768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU367604
AGGGTGTAAATGTCTCTGTAGTGTAATTTAACTGCACTCAGAATACCCGGTGTGAGGGAGTGGGCTGAGAGTAATCATTAGGTGGCTGCAAGCCTTGTGTGTAACGAGATGACAGTAGTGCCCCTTGGAGGTTTTCACCTGTCCTGGCTGAGAAAGCGGCTGAGGACATCAGATGCCTGCAACTCTTCAGTCAGCTGGACAGCCATGGAGACCTTAGAGAACTGAGGGGCTTGGACCCTGATGAAGCCCTGAGAACTACTGTCCACCTCAGAGAGGGGTTTCTCCTGTTTCTCGTGTTTCTCTCGCTCATAGGCCATCTTTTTTAGGAGTTTCATCATGGCGCGGTCTTTGCTCACTTTCTTCTGGTTCTCCGTGTTTTGTTTTCTGACTTGATTCATTATGAATTTAGGAATCGTCCAGAGCAGGTTTTGGTATCTGATGAGTAGTCGGACGATGTTGGCCGTCTCCGTGGCCAGGGAAAATTCCTGTTGCTCACTGATCTTGTTGCGGAAGCCTTTAAACATGAAGATGTTTGGCGCCATCACCACGGCAACGTTGTTCAAGGTCATCTTGTTCTGCTCTTTGTGGTCTATGACCCTCTGAAAGAACTCCATCAGCGCCTGAAACCGCCACAAGATACATTACAATGTGTCCAACAGACAACATGAGACTATACTGTATTGGCTAGAG

Function

symbol description
arhgap18 Acts upstream of or within negative regulation of sprouting angiogenesis. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human ARHGAP18 (Rho GTPase activating protein 18).

NR:

description
rho GTPase-activating protein 18 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU367604 True 690 lncRNA 0.48 3 15616049 15618768

Neighbor

gene id symbol gene type direction distance location
LOC110522173 LOC106607757 coding upstream 2628 15590795 ~ 15613421 (+)
lama2 lama2 coding upstream 25838 15449797 ~ 15590211 (+)
leg1 leg1 coding upstream 364693 15248791 ~ 15251356 (+)
LOC118964439 LOC106607753 coding upstream 369386 15245760 ~ 15246663 (+)
LOC110522163 LOC106607750 coding upstream 615479 14992265 ~ 15000570 (+)
LOC110522174 LOC106607759 coding downstream 26987 15645755 ~ 15680105 (+)
LOC110522175 LOC106607760 coding downstream 80036 15698804 ~ 15710542 (+)
LOC110522178 NA coding downstream 120326 15739094 ~ 15741483 (+)
LOC110522177 LOC106607761 coding downstream 214371 15833139 ~ 15881137 (+)
il20ra il20ra coding downstream 325725 15944493 ~ 15949042 (+)
G324664 NA non-coding upstream 13029 15602706 ~ 15603020 (+)
G324660 NA non-coding upstream 14021 15594070 ~ 15602028 (+)
G324597 NA non-coding upstream 147741 15465300 ~ 15468308 (+)
G324557 NA non-coding upstream 185808 15429886 ~ 15430241 (+)
G324697 NA non-coding downstream 63701 15682469 ~ 15682674 (+)
G324699 NA non-coding downstream 65543 15684311 ~ 15684628 (+)
G324701 NA non-coding downstream 66466 15685234 ~ 15685472 (+)
G324706 NA non-coding downstream 71901 15690669 ~ 15711629 (+)
G324581 NA non-coding downstream 93366 15712134 ~ 15713547 (+)
G322645 NA other upstream 1730546 13850287 ~ 13885503 (+)
G321447 NA other upstream 2472606 13142947 ~ 13143443 (+)
LOC110521046 LOC106607715 other upstream 2634498 12928115 ~ 12981592 (+)
LOC110522108 pm20d2 other upstream 2803684 12800778 ~ 12812377 (+)
LOC110522117 smim8 other upstream 3066935 12548411 ~ 12549119 (+)
G325389 fabp7 other downstream 816485 16435253 ~ 16436882 (+)
G327705 NA other downstream 2645522 18264290 ~ 18304442 (+)
G327995 LOC106607813 other downstream 2808386 18427154 ~ 18428907 (+)
G328474 NA other downstream 3138087 18756855 ~ 18757545 (+)
G328446 LOC106607916 other downstream 3175813 18794581 ~ 18806804 (+)

Expression


Co-expression Network