G324794


Basic Information

Item Value
gene id G324794
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 15885103 ~ 15886589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU367828
gttcaagggggccgaatactttcgcaaggcactgtaggtaactGCCCTAATAAAGGAAACACCCgtgtaaagtgtcttaatagagcATTAGGCCACCACGAACCACCAGAACcgcttcaatgtgccttggcatagattctacaagtgtctggaactctgttGGGGTGATGCCACACGATTGTTCCACGAGAAGTTCCAtcgtttggtgttttgttgatggtggtggaaaacatgttcaattgggttgagatctggtgactgagacacgcaccctttaaaccccctatgttcctttgagacccctctttccaAGTCACTGAGATATCTTCTTCTAGCCAtgatagccaaaataatgggcaactgggcatttttatacatgaccctaagcatgatgggatgttaatttctTAATTAACTCTGgatccacacctgtgtggaatcaCCTGTTTCCAATATACGGTACTTTGTATCCCATATTTACTTGTGTTTCCATGACCATGTCACCACAAATCCCTTGAATGATTTTAATTGTTCATGACAAATCCTGACAAGTATTCATAGACAATCGCAGCATGCAGGTTCACTCTCCTAGTAGAAAGCATTTTTAATATTTGACTATTGTTTTCACTGGGAGGTAGGTGAGGTAGTGCAATGTGAATATGTTTTGCTATTTGGAGCATTATTGAACTTTGGCTCACAGATCACCAATGTCTGCATTCCATTCATAACATATTCATAAACAGTTAATTATTAAACCAAGGAATGGCGTCAAATCTATTCTGGACTAATGGACCTAAATGAGGAAGAGATTAGTTGTTAGAGCTTTTGGTTGTTCCGTGATGGTCAACCGATAGCCCCAGAATCATCATCATGCCTCATTAGGTGTGCATAAAGTAATGTAGCGTTTGTCTTTCCATGGCATGGATAAGGAAGCCATAGTGGCACTGGGAAACCCTCCCGTCCCCCATAGATAATGAAGGCATTTTCACTACCCAgctgtacattttttttaatgctgCTGTTTTCACAGCAACGACAAAGATCTATAAATTGATTGTGCGGAGTTCATTTTCTCTCAAGAAAACAGAACATAAATATTGACATTGCATAATGACCCTGCATGAGGCTGTTTGAATTGTATTAAATGAGGGCAGAGCTGTTATTTTTCTACCTCCATCAATTTCCTATTGCTACTAATGATTTTGCCAATACATGAAGTACAATTATCACATTTTCTATCCATATGTTTTCAACTTTTTCCTCTTTTTCATTAGAAAGATTGTGGTCTCTTGTTGGCATTGGGTTTGTGTATTTTTCCCTGTTCCAGTCATATCCCCCCAGGATGTGCATACATCTGCCTCATAATGCCATGTGTCAACCTCAGGACtcgagaaacacacacacacacacacaca
>TU367830
gttcaagggggccgaatactttcgcaaggcactgtaggtaactGCCCTAATAAAGGAAACACCCgtgtaaagtgtcttaatagagcATTAGGCCACCACGAACCACCAGAACcgcttcaatgtgccttggcatagattctacaagtgtctggaactctgttGGGGTGATGCCACACGATTGTTCCACGAGAAGTTCCAtcgtttggtgttttgttgatggtggtggaaaacatgttcaattgggttgagatctggtgactgagacacgcaccctttaaaccccctatgttcctttgagacccctctttccaAGTCACTGAGATATCTTCTTCTAGCCAtgatagccaaaataatgggcaactgggcatttttatacatgaccctaagcatgatgggatgttaatttctTAATTAACTCTGgatccacacctgtgtggaatcaCCTGTTTCCAATATACGGTACTTTGTATCCCATATTTACTTGTGTTTCCATGACCATGTCACCACAAATCCCTTGAATGATTTTAATTGTTCATGACAAATCCTGACAAGTATTCATAGACAATCGCAGCATGCAGGTTCACTCTCCTAGTAGAAAGCATTTTTAATATTTGACTATTGTTTTCACTGGGAGGTAGGTGAGGTAGTGCAATGTGAATATGTTTTGCTATTTGGAGCATTATTGAACTTTGGCTCACAGATCACCAATGTCTGCATTCCATTCATAACATATTCATAAACAGTTAATTATTAAACCAAGGAATGGCGTCAAATCTATTCTGGACTAATGGACCTAAATGAGGAAGAGATTAGTTGTTAGAGCTTTTGGTTGTTCCGTGATGGTCAACCGATAGCCCCAGAATCATCATCATGCCTCATTAGGTGTGCATAAAGTAATGTAGCGTTTGTCTTTCCATGGCATGGATAAGGAAGCCATAGTGGCACTGGGAAACCCTCCCGTCCCCCATAGATAATGAAGGCATTTTCACTACCCAgctgtacattttttttaatgctgCTGTTTTCACAGCAACGACAAAGATCTATAAATTGATTGTGCGGAGTTCATTTTCTCTCAAGAAAACAGAACATAAATATTGACATTGCATAATGACCCTGCATGAGGCTGTTTGAATTGTATTAAATGAGGGCAGAGCTGTTATTTTTCTACCTCCATCAATTTCCTATTGCTACTAATGATTTTGCCAATACATGAAGTACAATTATCACATTTTCTATCCATATGTTTTCAACTTTTTCCTCTTTTTCATTAGAAAGATTGTGGTCTCTTGTTGGCATTGGGTTTGTGTATTTTTCCCTGTTCCAGTCATATCCCCCCAGGATGTGCATACATCTGCCTCATAATGCCATGTGTCAACCTCAGGACtcgagaaacacacacacacacacacacacacaccacccaatCCTCAGAAATAAATCACGAACAGCAAGTTTTCTGCCTTTTTATTCCCCACATTCCTGAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU367828 False 1415 lncRNA 0.40 1 15885103 15886517
TU367830 True 1487 lncRNA 0.41 1 15885103 15886589

Neighbor

gene id symbol gene type direction distance location
LOC110522177 LOC106607761 coding upstream 3969 15833139 ~ 15881137 (+)
LOC110522178 NA coding upstream 143620 15739094 ~ 15741483 (+)
LOC110522175 LOC106607760 coding upstream 174561 15698804 ~ 15710542 (+)
LOC110522174 LOC106607759 coding upstream 204998 15645755 ~ 15680105 (+)
LOC110522173 LOC106607757 coding upstream 271682 15590795 ~ 15613421 (+)
il20ra il20ra coding downstream 57904 15944493 ~ 15949042 (+)
hddc2 hddc2 coding downstream 181908 16068497 ~ 16073105 (+)
trdn NA coding downstream 435027 16321616 ~ 16370330 (+)
LOC110522194 NA coding downstream 487229 16373818 ~ 16375853 (+)
LOC110522197 NA coding downstream 544154 16430743 ~ 16433428 (+)
G324720 NA non-coding upstream 165435 15719425 ~ 15719668 (+)
G324719 NA non-coding upstream 166446 15718405 ~ 15718657 (+)
G324581 NA non-coding upstream 171556 15712134 ~ 15713547 (+)
G324706 NA non-coding upstream 173474 15690669 ~ 15711629 (+)
G324795 NA non-coding downstream 42 15886631 ~ 15886902 (+)
G324800 NA non-coding downstream 8494 15895083 ~ 15895318 (+)
G324803 NA non-coding downstream 14094 15900683 ~ 15900885 (+)
G324810 NA non-coding downstream 27576 15914165 ~ 15914958 (+)
G324809 med23 non-coding downstream 34993 15921582 ~ 15922198 (+)
G322645 NA other upstream 1999600 13850287 ~ 13885503 (+)
G321447 NA other upstream 2741660 13142947 ~ 13143443 (+)
LOC110521046 LOC106607715 other upstream 2903552 12928115 ~ 12981592 (+)
LOC110522108 pm20d2 other upstream 3072738 12800778 ~ 12812377 (+)
LOC110522117 smim8 other upstream 3335989 12548411 ~ 12549119 (+)
G325389 fabp7 other downstream 548664 16435253 ~ 16436882 (+)
G327705 NA other downstream 2377701 18264290 ~ 18304442 (+)
G327995 LOC106607813 other downstream 2540565 18427154 ~ 18428907 (+)
G328474 NA other downstream 2870266 18756855 ~ 18757545 (+)
G328446 LOC106607916 other downstream 2907992 18794581 ~ 18806804 (+)

Expression


Co-expression Network