G328760


Basic Information

Item Value
gene id G328760
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 18795022 ~ 18862375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU372147
agaaattctgctaattcctgggtgatgcatcatcttggtttcgcctgtagaatgagttctggggcacttacagacaaaatctttgcagattctgaaacttcagagtgttttctttccaaaactgtcaagaatatgcatagtcgagcatcttttcgtgacaaaatatcgcgctttttatccaaaaatgaaatagcgcccctagagctctaacaggttaatgtgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttgtccgcatattttaagtcagaaccgtccagagtagtgatgctggacgctggacgggcgggcaggtgcgggcagcgatcggttgaagagcaggcATTTAGTttcacttgcatttaagagcagttggaggccacggaaggagagttgtatggcattgaagctcgtctggaggttagttaacacagtgtccaacgaagggccagaggtatacaggatggtgtcgtctgcgtagaggtggatcaaagaatcaccagcagcgagagcgacatcattgatgtatacagagaagagtcggcccgagaattgaaccctgtggcacccccatagagactgccagaggtccggacaacaggccctccgatttgacatactgaactctattggagaagtagttggtgatcaATGTGCTGCTTAGCTTCCTCTACTGTCCAACTAACCCATCCTGGGCTCAAACCAGTAATCCAGGTTTCTAACTGTTAATGGAAACCTGTTCACCACAATTGCTGGACAGTAAGAGGATAAATGCCATATGAATTTGTTTATTAGATCACTTTGATAATGCCATTTCCTGTGCTGTTTGAATGTTTATCTTCAGATGCTCAATGTGACACATGTTTGATGTTTTGTTGAGTAAAACATGTCCCAGTATATTGAACTGCAAATGCTGCAATATGATtgctgtaaaaaaataaagaaataatatatacagtgtgtgtgtacagatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcagg
>TU372144
actgtatgtatgtatgtatgtatgtatgtatgtatatatatataaaaaaaatactgaaataccttgtttacataagtattcagaccctttgctatgagacttgaaagtttgctcaggtgcatcctgtttccattgaccatccttgacatgtttctacaacttgattggagtccacctgtcgtaaattcaattggttggacatgatttggaaaggcacacacctgtatttattaggtcccacagttgataatgcatgtcagagcaaaaaccaagccatgaggtcgaaggaattgtccgtagagctccaagacagaatTGTGTCACAACACAGATCACCAAGATTTTTCATAGAGCTGGCTGtagggccaaactgagcaatcgggggagtgctttggtcagggaggtgaccaagaacccgatggtcactctgacagaggtcctctgtagagatgggagaaccttccagaaagacaaccatctccgcagcactccaccaatcaggcctttatggtagagtggccaaacggaagccactcctcagttaaaggcacatgacagcccgcttggagtttgccaaaggcacctaaagactctcagaccatgagtaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccaagtgtcacatctggaggaaacctggcaccatccctaaagtgaagcatggtggtggcagcatcattctgtggggatgtttttccagcagcagagactgggagactagtcaggatcgaggcaaagatgaacagagaaaagtacagagatccttgatgaaaacattcaccttccaacaggacaacgaccctaagcacacagccaaggcaacgcaggagtggttccaggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaacccaatcaaacatctctggagagacctgaaaatagccgtgcagtgacgcttcccatccaacctgacagagcttgagaggatctgcagtgaatAATGTGGgaactcccaaatacaggtgtaaacggtctgaatagttatctaaatgtgatatttccg
>TU372150
gagagtttacagtctaaccagacacctaggtatttgtagttgtccacatattctaagtcagaaccgtccagagtagcgatgctggatgggcgggcaggtgcgggcagcgatcggttgaagagcaggcATTTAGTttcacttgcatttaagagcagttggaggccacggaaggagagttgtatggcattgaagctcgtctggaggttagttaacacagtgtccaacgaagggccagaggtatacaggatggtgtcgtctgcgtagaggtggatcaaagaatcaccagcagcgagagcgacatcattgatgtatacagagaagagtcggcccgagaattgaaccctgtggcacccccatagagactgccagaggtccggacaacaggccctccgatttgacatactgaactctattggagaagtagttggtgatcaATGTGCTGCTTAGCTTCCTCTACTGTCCAACTAACCCATCCTGGGCTCAAACCAGTAATCCAGGTTTCTAACTGTTAATGGAAACCTGTTCACCACAATTGCTGGACAGTAAGAGGATAAATGCCATATGAATTTGTTTATTAGATCACTTTGATAATGCCATTTCCTGTGCTGTTTGAATGTTTATCTTCAGATGCTCAATGTGACACATGTTTGATGTTTTGTTGAGTAAAACATGTCCCAGTATATTGAACTGCAAATGCTGCAATATGATtgctgtaaaaaaataaagaaataatatatacagtgtgtgtgtacagatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372147 False 1056 lncRNA 0.44 2 18795022 18799253
TU372144 False 1091 TUCP 0.46 2 18795106 18862375
TU372150 True 809 lncRNA 0.45 2 18798206 18859914

Neighbor

gene id symbol gene type direction distance location
LOC110522239 cited2 coding downstream 244441 18547787 ~ 18550581 (-)
LOC110522238 LOC100194707 coding downstream 249416 18523675 ~ 18545606 (-)
LOC110522236 LOC106607814 coding downstream 297785 18473614 ~ 18497237 (-)
LOC110522235 LOC106607813 coding downstream 351300 18427318 ~ 18443722 (-)
esco2 esco2 coding downstream 398596 18391944 ~ 18396426 (-)
LOC110520976 LOC106607917 coding upstream 104476 18964390 ~ 18978387 (-)
LOC110522245 hivep2 coding upstream 160077 19019991 ~ 19119788 (-)
LOC110520978 batf3 coding upstream 381945 19241859 ~ 19243094 (-)
LOC110522252 LOC106607829 coding upstream 468233 19328013 ~ 19453370 (-)
itpkb LOC106607834 coding upstream 723305 19583219 ~ 19637211 (-)
G328808 NA non-coding downstream 13985 18780805 ~ 18781037 (-)
G328796 NA non-coding downstream 26773 18768038 ~ 18768249 (-)
G328793 NA non-coding downstream 33471 18761274 ~ 18761551 (-)
G328792 NA non-coding downstream 35185 18759264 ~ 18759837 (-)
G328777 NA non-coding downstream 55085 18739656 ~ 18739937 (-)
G328893 NA non-coding upstream 57009 18916923 ~ 18921923 (-)
G328912 NA non-coding upstream 90007 18949921 ~ 18952174 (-)
G328973 NA non-coding upstream 170228 19030142 ~ 19030349 (-)
G328985 NA non-coding upstream 191422 19051336 ~ 19051560 (-)
G328987 NA non-coding upstream 193118 19053032 ~ 19053684 (-)
G328236 NA other downstream 347992 18446583 ~ 18447030 (-)
LOC110522229 LOC106607809 other downstream 509612 18022013 ~ 18286490 (-)
G327409 LOC106607793 other downstream 994553 17795190 ~ 17800469 (-)
vgll2a LOC106607788 other downstream 1228875 17559268 ~ 17566213 (-)
G325960 LOC106607776 other downstream 2132141 16646755 ~ 16662881 (-)
G329663 LOC106607828 other upstream 421224 19281138 ~ 19281481 (-)
G329681 NA other upstream 451179 19311093 ~ 19318679 (-)
LOC110522258 LOC106607836 other upstream 833650 19678324 ~ 19728627 (-)
rcan2 LOC106607629 other upstream 1421212 20166436 ~ 20286886 (-)
LOC110522275 LOC106607631 other upstream 1483255 20328761 ~ 20419762 (-)

Expression

G328760 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
End of interactive chart.

G328760 Expression in each Bioproject

Bar chart with 21 bars.
G328760 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network