G330215


Basic Information

Item Value
gene id G330215
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 20335224 ~ 20335624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU373854
GTGTGGCACCCTCACCTGATCGTTACACATGGAGTTGATGTCACCAAGGTTACTGTTGCCCATGCCAACAGGTGGTCCAATGGAAGGTAGCGAACCCACTGCCCCTGAGCCTCCTGCCATTGACACGGTGATACTCATGTTGTTGTAGACCCCCTGTTGCCCAAAGGCCTGGGGCGTCGTCTGACCAGACTGGCTGAACAAGCtgacacagacagaacacacattcATGATACCAGTGGCTTAATGTACACTTCGTTCAGTTGCTACATCTGGTCATTACAATTACTAGGAAATGATATAGAAGCAGTCGATACATTTTGATACCTTCTTCACTCCAAATAATTAAACACATCTGGTATAATGTTACATAAGTGATTGTTTGAAAGAATCCTCTAAGAAAC

Function

NR:

description
nuclear receptor coactivator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373854 True 401 lncRNA 0.45 1 20335224 20335624

Neighbor

gene id symbol gene type direction distance location
LOC110522276 ptrhd1 coding upstream 6611 20327095 ~ 20328613 (+)
slc25a27 slc25a27 coding upstream 25805 20303720 ~ 20309419 (+)
msra msra coding upstream 176379 20055721 ~ 20158845 (+)
ift172 ift172 coding upstream 291387 20015451 ~ 20043837 (+)
trnaa-ugc-6 NA coding upstream 319953 20015200 ~ 20015271 (+)
LOC110522280 NA coding downstream 84580 20420184 ~ 20423056 (+)
LOC118964445 NA coding downstream 92269 20427893 ~ 20431723 (+)
LOC110522277 LOC106607858 coding downstream 98150 20433774 ~ 20471815 (+)
LOC110521055 enah coding downstream 157874 20493498 ~ 20651888 (+)
LOC110522282 LOC106607865 coding downstream 319341 20654965 ~ 20667264 (+)
G329650 LOC106607854 non-coding upstream 17934 20312060 ~ 20317290 (+)
G329649 LOC106607854 non-coding upstream 23871 20309777 ~ 20311353 (+)
G329641 NA non-coding upstream 47006 20287010 ~ 20288218 (+)
G329632 NA non-coding upstream 71188 20263785 ~ 20264036 (+)
G330216 NA non-coding downstream 139 20335763 ~ 20335962 (+)
G330217 LOC106607631 non-coding downstream 572 20336196 ~ 20336525 (+)
G330219 NA non-coding downstream 2245 20337869 ~ 20338125 (+)
G330220 NA non-coding downstream 3198 20338822 ~ 20339109 (+)
G330221 NA non-coding downstream 3788 20339412 ~ 20339895 (+)
G329626 NA other upstream 81313 20252767 ~ 20253911 (+)
G329556 NA other upstream 235168 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 1064699 19269334 ~ 19308960 (+)
LOC110522250 LOC106607827 other upstream 1066668 19258560 ~ 19268556 (+)
LOC110522244 LOC106607820 other upstream 1406147 18882852 ~ 18952184 (+)
G330771 NA other downstream 485044 20820668 ~ 20821157 (+)
LOC110522308 LOC106607893 other downstream 1348310 21683716 ~ 21701617 (+)
G332458 LOC106584613 other downstream 2162876 22498500 ~ 22498996 (+)
G332507 NA other downstream 2257306 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 2620255 22955879 ~ 22958196 (+)

Expression


Co-expression Network