G330217 (LOC106607631)


Basic Information

Item Value
gene id G330217
gene name LOC106607631
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 20336196 ~ 20336525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU373856
ACAGGCTGCACCGCCGAGTTCACCACCCCCCCAAACTGTCCCTGCATCCCCCCCATCATAGTTGCCTGGCTGCCCATAGGGCCCTGGCCCGACAACTTAGGGTCCTGGGTCCCTCCCATGGGGTTGAATAGGCTGGGGGAACTGGGTGGGTTCCCTGGAATGGGGCTGTAGCCTGGAGGGTAGCCAAACTGTTGTTGCTGTGGCTGGGGTCCTTTTTGTCCCCTGGTGGCTCCCATAGGCCCACCACCCCCCATGCCCTGCCTCATCAACATGACCTTCTGCTGCAGGAGTTGTCTCTGGCGGTGCTGGAAGCTGTAGAGCTCCCGCTGC

Function

NR:

description
nuclear receptor coactivator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373856 True 330 lncRNA 0.62 1 20336196 20336525

Neighbor

gene id symbol gene type direction distance location
LOC110522276 ptrhd1 coding upstream 7583 20327095 ~ 20328613 (+)
slc25a27 slc25a27 coding upstream 26777 20303720 ~ 20309419 (+)
msra msra coding upstream 177351 20055721 ~ 20158845 (+)
ift172 ift172 coding upstream 292359 20015451 ~ 20043837 (+)
trnaa-ugc-6 NA coding upstream 320925 20015200 ~ 20015271 (+)
LOC110522280 NA coding downstream 83679 20420184 ~ 20423056 (+)
LOC118964445 NA coding downstream 91368 20427893 ~ 20431723 (+)
LOC110522277 LOC106607858 coding downstream 97249 20433774 ~ 20471815 (+)
LOC110521055 enah coding downstream 156973 20493498 ~ 20651888 (+)
LOC110522282 LOC106607865 coding downstream 318440 20654965 ~ 20667264 (+)
G330216 NA non-coding upstream 234 20335763 ~ 20335962 (+)
G330215 NA non-coding upstream 572 20335224 ~ 20335624 (+)
G329650 LOC106607854 non-coding upstream 18906 20312060 ~ 20317290 (+)
G329649 LOC106607854 non-coding upstream 24843 20309777 ~ 20311353 (+)
G330219 NA non-coding downstream 1344 20337869 ~ 20338125 (+)
G330220 NA non-coding downstream 2297 20338822 ~ 20339109 (+)
G330221 NA non-coding downstream 2887 20339412 ~ 20339895 (+)
G330259 NA non-coding downstream 58574 20395099 ~ 20395300 (+)
G330261 NA non-coding downstream 60126 20396651 ~ 20397308 (+)
G329626 NA other upstream 82285 20252767 ~ 20253911 (+)
G329556 NA other upstream 236140 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 1065671 19269334 ~ 19308960 (+)
LOC110522250 LOC106607827 other upstream 1067640 19258560 ~ 19268556 (+)
LOC110522244 LOC106607820 other upstream 1407119 18882852 ~ 18952184 (+)
G330771 NA other downstream 484143 20820668 ~ 20821157 (+)
LOC110522308 LOC106607893 other downstream 1347409 21683716 ~ 21701617 (+)
G332458 LOC106584613 other downstream 2161975 22498500 ~ 22498996 (+)
G332507 NA other downstream 2256405 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 2619354 22955879 ~ 22958196 (+)

Expression


Co-expression Network