G330221


Basic Information

Item Value
gene id G330221
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 20339412 ~ 20339895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU373860
CTTCACCAGCTTGTCGATGCCCAGGGCTCGGTCCAGCTCAGCCAGCTCGCTCTCATCTGTGCCACTCAGGAAGGACACCAGCTGGTCCAGGAGGGCCTTCTCATCGTTACGTCCCtcgggggtggtgggggggcacAGCAGCTCATCCAGTGGGCACGGGACACACTGCCTGCTCCACACACAGGGGGAGTCCGGAACATGGGAGTGTGTCGATGCAATATAAAGATGGGCAAGGTTTGTTTCTGTGTGCCTGTGCATTGGAATGTGAGCaatgaatgtgtctgtgtgtttcttctACATAGAAGTACTATACTCACTCCTGAGGGGAGGCCAGAGAGGCTTGCACAGGGTTTCCCACGCCTCCATCAAAGGACAGAGTCTCAGTTAGGGCCAGGGTCTGGAACTGCTGAGAGTCTGTCTCCATCTTAGACAACGCTGGAGGACAGCACACACACTCTTAATGAACCACCAAGAAACAAACAAC

Function

NR:

description
nuclear receptor coactivator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373860 True 484 lncRNA 0.55 1 20339412 20339895

Neighbor

gene id symbol gene type direction distance location
LOC110522276 ptrhd1 coding upstream 10799 20327095 ~ 20328613 (+)
slc25a27 slc25a27 coding upstream 29993 20303720 ~ 20309419 (+)
msra msra coding upstream 180567 20055721 ~ 20158845 (+)
ift172 ift172 coding upstream 295575 20015451 ~ 20043837 (+)
trnaa-ugc-6 NA coding upstream 324141 20015200 ~ 20015271 (+)
LOC110522280 NA coding downstream 80309 20420184 ~ 20423056 (+)
LOC118964445 NA coding downstream 87998 20427893 ~ 20431723 (+)
LOC110522277 LOC106607858 coding downstream 93879 20433774 ~ 20471815 (+)
LOC110521055 enah coding downstream 153603 20493498 ~ 20651888 (+)
LOC110522282 LOC106607865 coding downstream 315070 20654965 ~ 20667264 (+)
G330220 NA non-coding upstream 303 20338822 ~ 20339109 (+)
G330219 NA non-coding upstream 1287 20337869 ~ 20338125 (+)
G330217 LOC106607631 non-coding upstream 2887 20336196 ~ 20336525 (+)
G330216 NA non-coding upstream 3450 20335763 ~ 20335962 (+)
G330215 NA non-coding upstream 3788 20335224 ~ 20335624 (+)
G330259 NA non-coding downstream 55204 20395099 ~ 20395300 (+)
G330261 NA non-coding downstream 56756 20396651 ~ 20397308 (+)
G330267 NA non-coding downstream 66788 20406683 ~ 20406941 (+)
G330242 NA non-coding downstream 83376 20423271 ~ 20424553 (+)
G329626 NA other upstream 85501 20252767 ~ 20253911 (+)
G329556 NA other upstream 239356 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 1068887 19269334 ~ 19308960 (+)
LOC110522250 LOC106607827 other upstream 1070856 19258560 ~ 19268556 (+)
LOC110522244 LOC106607820 other upstream 1410335 18882852 ~ 18952184 (+)
G330771 NA other downstream 480773 20820668 ~ 20821157 (+)
LOC110522308 LOC106607893 other downstream 1344039 21683716 ~ 21701617 (+)
G332458 LOC106584613 other downstream 2158605 22498500 ~ 22498996 (+)
G332507 NA other downstream 2253035 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 2615984 22955879 ~ 22958196 (+)

Expression


Co-expression Network