G331225


Basic Information

Item Value
gene id G331225
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 21330097 ~ 21334008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU374947
CACAAATCCAATTAACATTTCCCAATAGGAATATTGCCACGTTCACGTGcaagtcggaactaggaaactcagaaATGGCCAACTTGCTACCTGGTTGTAGTTATACGGGTGCCAcgttcaaccagttagcaagtcggacatttcagagtttcctagttccgactagcatgtGAATGCGTAATTTGGATCAGTTAACCAACATGAAACAGTTTTAACAAAAATATCTGCAAAAGATTGTGCTTTAGAATAAAAGGTGGGGGAGTATCAATCTAATGTATTTATGAAGctatttttacatcagcagatgtcacacaGTGCTATACAGAaccacagcctaaaaccccaaacaatgcagatgtagaagcacggtagctaggaaacactccctagaaaggcaggaaccatGTATGAAACTTAgataggaaccaggctctgaggggcggccagtcctcttctggctgtgccaggtggactATAAGAGTACATGGCAATTGAAAGCCAGATTGGAATAACCATTGGAGTAACCATTCAATGATATTCAGCATTCATTTGTCATATAAATATACAATGAATATACAAAACATCAAcaacacatgctctttccatggactgaccagatgaatccaggagaaagctatgatcacttattgatgtcacttgttaaatccacgtcAATCACTGTAGATGAAGGAGATAAGACcttagacaattgagacatggattgtgtatgtgccattcagagggagaatgggcaagacaaaatatttaagtgccgttgaaaggggtatggtagtaggtgcctggtGCACAagttgtcaagaactgcaacgctgctgggtttcacACAACAGTTTGCCgggtgtatcaagaatggcccaccacccaaaggacattcagccaacttgacacatctgtgggaagcattggagtcaacatgggccagcctccctgtggaacactttcggcaccttgtagagtccatgccccaacaaattgagggtGTTCTGaggccaaagggggggggggggggtagaggggcaactcaatattaagaaggtgttcctaatgtttggtatactcagtgtatattgcatATGAGATCTTAAACTACACATGGTATAACCAGCAGAAAGGGGAATGTCTACAAGGCactgattaataaaaaaaataaaaaattaaagaaGCAACTGCATCCTATACATTTTCACCACTGAAGGGAAACTCTTCAATGCACCTTAGGTTACATTTATACCTGTATTTTAAAACAGATCCAAGGATGTCAGctggtttaaaaaataaaatcggTGCATTGTCAAATGCAAAGACATAGGAGAAGGAAATAAACAGATTTCCCTTTTAGGCAAattgtgtgtgggggagggaagaggaatATCGTGCAAGGCTATGAAAATATTTGCTAAAGCAAAAATAGGTAATCCTTGTAAGGTCATAATGATGAGAAATTAAACACACTAATATCAGTCAATTCCTGTtgttccaatgtaaaaaataataataataattaaaccaCACATTTCAGTCAAACAAATGTCATACTGTAGTTTATGTACAGTAAGTAATTCCCCAGTAAAACCAATTGTCAGCTACAACGTGATCATTGGTTTAGTGGCATATATATAACAAGACATTTCATGATTGTCACTTTCTATATACAATATAACCTATAGCTGTGTGCATTACATATCAAACAATTACTTTTGCTGTTGTTTTTCTATTTGTACTGTATGCACCACATATCATTTAAAGCACAACTATTATAATTGTGGATGGGTAAGGGATTCTGAAGCTGGACAAGCGTCACCCCATTTGGGCAAACGGCTCAACTCTCTTATCTGTTCTGAAGAATGTATACAAATGGCAACGATCTAACATGTAATAGAAGTCAAGGATGTATAACGCTGATTCAGTTTTATTTTCTATGTAAAGTAATTTATGTGCACCATAATAATTAGCTGCTGGTGCTGAAACATTGTATGTTCTTTTTTTATGAAGTATAACATCGTAATGCTTTACTTTAAATAAAATGTGTCTTCATTTTTAAGAAATAAAAAGAAAACCCAGTTACATAAAAAGAGAAAGCAAAAATAATCAGCTTGTTTATAATCTGTTTTGAAACATAAAGAAATATATTTGGCGATCATGTTACTTTTGGTAATAAGAGTAATAACAACCAAGCTATAAATCACACTGCTGCATACACACCATAACAAACCCCCAAAATGTTTTGTAAACCCCTTGGAAGacctcattaaaatatatatatatatataacgcaCTGCAGCCTTTGGAACCCTGAACATTTTAAATGGCACTTATTTCCTCAACCCTCTCAGTACATCAAAAAGATGAGAATGAGAAGTCCATTGTTCATAGACGTTTGGCATAGTTATTACAAAGGACATGGTCACGGATATCACCCCACCCTCCGTTTTTCATATGAGCCTTGTGCTCCACTGAATCTGCATTTGTTAGGGCCAGGGACTGAGGGAAGAGGGAAGCTTTGGCAAGCTTAAGGGACACCTGTGCTTTCTTTAGGGCCAGCTCAGGGCGACAGGCCTCCTTGTTCTGGTGCAGCCCACAGTTACCAGTATGGAGAACCCTGGACCCCTGGGCCACCAGCACTTTGAGTGGCTTGGAGATGCAAGTCCCTGACAGGTGCTGGAGGGTCCAGTCCCAGTTGTAGTCATCGTAGGAGCAGAAGTCATTGTTGCACCCCATTAGCTTGTAGTACACCTCTCTGGAGATGCCCATGCCAATGTTGTGCTTGGTAGACATCCACCCGGCAGTCTGCACCTTGTTGCTGAGCTTATCAAATTCTGCCATGCCGTTGTAGTTGCCTAGTGCCAACATGTCACAGTCAGGGCAGCTGCTCTTCCTGTATTTAACCATCTCCTTGAAGAGGTGGTAGAGGTCGGGCAAGATGAAGTTATCCTCCTCGAGGAAGACAACAAAGCCACTGTAACCTTGCAGAGCCTGCACTCGCTCCCACACAAAGTGAAGTTTCCACCACCAGTGGTGTTTGGTCTGTGTGATGGAGGCGTCCCTATAGTGGCCATATGAATCTGGATGCTCAGCGTTGAGGCATCCTGTTTTTAAAGCATCGTCCTTGGATATGTCTCGTGGACAGTCCCGTGAATCCTGCCCAGGAAACTCACTGGGATAGAGCTGTGTGCTGTAGGGGAAGTATATTTGCAAGACCTTGCAGAAAGTTATCCCTTGCACTATGTAATTGATTTCCTCTGAAAAATAGTCGTGGCTGAAAATCAGCAGTAAGTTGTGGACCTCAGCTGCATTTTCCAATGACTTGATGAGTATTTTGAGGTAGTCTGGTCTGTTGTGAACCTGAATAACCAGGACCAATTTAGTCTCCCCAGGATACTTGTTCGCATTCTGAACGTATTGCTTGTAATTGGCATTGTAAATAGACTTGATCAATTCTGGAACAGAACTGTAATGAAACTTTGCCTTGTCATCAGGCAACATGTTTTCCTGAGCGACAACACCCGTGACTTCATCAGAAATGAATACACGTGTTGTGATCATGACAGTGGCAATAATAAAAGAAACACCAAGGATAATGAGCAGGTTCTTTTTGAGAAATCGTAACCTCATTTTCGTAACGTTAAAGGCAGCCGTTGTATGCAATAATGATGGTTTGAATCACCTGACTATTGAAAGCGTCCTCATCTTGTTTGCATTTGCCATTTTCGATGGAACCCAAATGCAGCAGTTTCCACAGAACGTTACAAACTGGTACGCGAAGAAATCGTTCGTTGATGATGACTCTTTTTGCTGACACGGATCTGTCAGTTCGGTTGATCGATATCATCTGTTGCTATTGCTGTTTAGAAGTTTAG
>TU374952
ACCTTAGGTTACATTTATACCTGTATTTTAAAACAGATCCAAGGATGTCAGctggtttaaaaaataaaatcggTGCATTGTCAAATGCAAAGACATAGGAGAAGGAAATAAACAGATTTCCCTTTTAGGCAAattgtgtgtgggggagggaagaggaatATCGTGCAAGGCTATGAAAATATTTGCTAAAGCAAAAATAGGTAATCCTTGTAAGGTCATAATGATGAGAAATTAAACACACTAATATCAGTCAATTCCTGTtgttccaatgtaaaaaataataataataattaaaccaCACATTTCAGTCAAACAAATGTCATACTGTAGTTTATGTACAGTAAGTAATTCCCCAGTAAAACCAATTGTCAGCTACAACGTGATCATTGGTTTAGTGGCATATATATAACAAGACATTTCATGATTGTCACTTTCTATATACAATATAACCTATAGCTGTGTGCATTACATATCAAACAATTACTTTTGCTGTTGTTTTTCTATTTGTACTGTATGCACCACATATCATTTAAAGCACAACTATTATAATTGTGGATGGGTAAGGGATTCTGAAGCTGGACAAGCGTCACCCCATTTGGGCAAACGGCTCAACTCTCTTATCTGTTCTGAAGAATGTATACAAATGGCAACGATCTAACATGTAATAGAAGTCAAGGATGTATAACGCTGATTCAGTTTTATTTTCTATGTAAAGTAATTTATGTGCACCATAATAATTAGCTGCTGGTGCTGAAACATTGTATGTTCTTTTTTTATGAAGTATAACATCGTAATGCTTTACTTTAAATAAAATGTGTCTTCATTTTTAAGAAATAAAAAGAAAACCCAGTTACATAAAAAGAGAAAGCAAAAATAATCAGCTTGTTTATAATCTGTTTTGAAACATAAAGAAATATATTTGGCGATCATGTTACTTTTGGTAATAAGAGTAATAACAACCAAGCTATAAATCACACTGCTGCATACACACCATAACAAACCCCCAAAATGTTTTGTAAACCCCTTGGAAGacctcattaaaaaaaaaatatatatatatataacgcaCTGCAGCCTTTGGAACCCTGAACATTTTAAATGGCACTTATTTCCTCAACCCTCTCAGTACATCAAAAAGATGAGAATGAGAAGTCCATTGTTCATAGACGTTTGGCATAGTTATTACAAAGGACATGGTCACGGATATCACCCCACCCTCCGTTTTTCATATGAGCCTTGTGCTCCACTGAATCTGCATTTGTTAGGGCCAGGGACTGAGGGAAGAGGGAAGCTTTGGCAAGCTTAAGGGACACCTGTGCTTTCTTTAGGGCCAGCTCAGGGCGACAGGCCTCCTTGTTCTGGTGCAGCCCACAGTTACCAGTATGGAGAACCCTGGACCCCTGGGCCACCAGCACTTTGAGTGGCTTGGAGATGCAAGTCCCTGACAGGTGCTGGAGGGTCCAGTCCCAGTTGTAGTCATCGTAGGAGCAGAAGTCATTGTTGCACCCCATTAGCTTGTAGTACACCTCTCTGGAGATGCCCATGCCAATGTTGTGCTTGGTAGACATCCACCCGGCAGTCTGCACCTTGTTGCTGAGCTTATCAAATTCTGCCATGCCGTTGTAGTTGCCTAGTGCCAACATGTCACAGTCAGGGCAGCTGCTCTTCCTGTATTTAACCATCTCCTTGAAGAGGTGGTAGAGGTCGGGCAAGATGAAGTTATCCTCCTCGAGGAAGACAACAAAGCCACTGTAACCTTGCAGAGCCTGCACTCGCTCCCACACAAAGTGAAGTTTCCACCACCAGTGGTGTTTGGTCTGTGTGATGGAGGCGTCCCTATAGTGGCCATATGAATCTGGATGCTCAGCGTTGAGGCATCCTGTTTTTAAAGCATCGTCCTTGGATATGTCTCGTGGACAGTCCCGTGAATCCTGCCCAGGAAACTCACTGGGATAGAGCTGTGTGCTGTAGGGGAAGTATATTTGCAAGACCTTGCAGAAAGTTATCCCTTGCACTATGTAATTGATTTCCTCTGAAAAATAGTCGTGGCTGAAAATCAGCAGTAAGTTGTGGACCTCAGCTGCATTTTCCAATGACTTGATGAGTATTTTGAGGTAGTCTGGTCTGTTGTGAACCTGAATAACCAGGACCAATTTAGTCTCCCCAGGATACTTGTTCGCATTCTGAACGTATTGCTTGTAATTGGCATTGTAAATAGACTTGATCAATTCTGGAACAGAACTGTAATGAAACTTTGCCTTGTCATCAGGCAACATGTTTTCCTGAGCGACAACACCCGTGACTTCATCAGAAATGAATACACGTGTTGTGATCATGACAGTGGCAATAATAAAAGAAACACCAAGGATAATGAGCAGGTTCTTTTTGAGAAATCGTAACCTCATTTTCGTAACGTTAAAGGCAGCCGTTGTATGCAATAATGATGGTTTGAATCACCTGACTATTGAAAGCGTCCTCATCTTGTTTGCATTTGCCATTTTCGATGGAACCCAAATGCAGCAGTTTCCACAGAACGTTACAAACTGGTACGCGAAGAAATCGTTCGTTGATGATGACTCTTTTTGCTGACACGGATCTGTCAGTTCGGTTGATCGATATCATCTGTTGCTATTGCTGTTTAGAAGTTTAG
>TU374949
AGTAATTCCCCAGTAAAACCAATTGTCAGCTACAACGTGATCATTGGTTTAGTGGCATATATATAACAAGACATTTCATGATTGTCACTTTCTATATACAATATAACCTATAGCTGTGTGCATTACATATCAAACAATTACTTTTGCTGTTGTTTTTCTATTTGTACTGTATGCACCACATATCATTTAAAGCACAACTATTATAATTGTGGATGGGTAAGGGATTCTGAAGCTGGACAAGCGTCACCCCATTTGGGCAAACGGCTCAACTCTCTTATCTGTTCTGAAGAATGTATACAAATGGCAACGATCTAACATGTAATAGAAGTCAAGGATGTATAACGCTGATTCAGTTTTATTTTCTATGTAAAGTAATTTATGTGCACCATAATAATTAGCTGCTGGTGCTGAAACATTGTATGTTCTTTTTTTATGAAGTATAACATCGTAATGCTTTACTTTAAATAAAATGTGTCTTCATTTTTAAGAAATAAAAAGAAAACCCAGTTACATAAAAAGAGAAAGCAAAAATAATCAGCTTGTTTATAATCTGTTTTGAAACATAAAGAAATATATTTGGCGATCATGTTACTTTTGGTAATAAGAGTAATAACAACCAAGCTATAAATCACACTGCTGCATACACACCATAACAAACCCCCAAAATGTTTTGTAAACCCCTTGGAAGacctcattaaaaaaaaatatatatataacgcaCTGCAGCCTTTGGAACCCTGAACATTTTAAATGGCACTTATTTCCTCAACCCTCTCAGTACATCAAAAAGATGAGAATGAGAAGTCCATTGTTCATAGACGTTTGGCATAGTTATTACAAAGGACATGGTCACGGATATCACCCCACCCTCCGTTTTTCATATGAGCCTTGTGCTCCACTGAATCTGCATTTGTTAGGGCCAGGGACTGAGGGAAGAGGGAAGCTTTGGCAAGCTTAAGGGACACCTGTGCTTTCTTTAGGGCCAGCTCAGGGCGACAGGCCTCCTTGTTCTGGTGCAGCCCACAGTTACCAGTATGGAGAACCCTGGACCCCTGGGCCACCAGCACTTTGAGTGGCTTGGAGATGCAAGTCCCTGACAGGTGCTGGAGGGTCCAGTCCCAGTTGTAGTCATCGTAGGAGCAGAAGTCATTGTTGCACCCCATTAGCTTGTAGTACACCTCTCTGGAGATGCCCATGCCAATGTTGTGCTTGGTAGACATCCACCCGGCAGTCTGCACCTTGTTGCTGAGCTTATCAAATTCTGCCATGCCGTTGTAGTTGCCTAGTGCCAACATGTCACAGTCAGGGCAGCTGCTCTTCCTGTATTTAACCATCTCCTTGAAGAGGTGGTAGAGGTCGGGCAAGATGAAGTTATCCTCCTCGAGGAAGACAACAAAGCCACTGTAACCTTGCAGAGCCTGCACTCGCTCCCACACAAAGTGAAGTTTCCACCACCAGTGGTGTTTGGTCTGTGTGATGGAGGCGTCCCTATAGTGGCCATATGAATCTGGATGCTCAGCGTTGAGGCATCCTGTTTTTAAAGCATCGTCCTTGGATATGTCTCGTGGACAGTCCCGTGAATCCTGCCCAGGAAACTCACTGGGATAGAGCTGTGTGCTGTAGGGGAAGTATATTTGCAAGACCTTGCAGAAAGTTATCCCTTGCACTATGTAATTGATTTCCTCTGAAAAATAGTCGTGGCTGAAAATCAGCAGTAAGTTGTGGACCTCAGCTGCATTTTCCAATGACTTGATGAGTATTTTGAGGTAGTCTGGTCTGTTGTGAACCTGAATAACCAGGACCAATTTAGTCTCCCCAGGATACTTGTTCGCATTCTGAACGTATTGCTTGTAATTGGCATTGTAAATAGACTTGATCAATTCTGGAACAGAACTGTAATGAAACTTTGCCTTGTCATCAGGCAACATGTTTTCCTGAGCGACAACACCCGTGACTTCATCAGAAATGAATACACGTGTTGTGATCATGACAGTGGCAATAATAAAAGAAACACCAAGGATAATGAGCAGGTTCTTTTTGAGAAATCGTAACCTCATTTTCGTAACGTTAAAGGCAGCCGTTGTATGCAATAATGATGGTTTGAATCACCTGACTATTGAAAGCGTCCTCATCTTGTTTGCATTTGCCATTTTCGATGGAACCCAAATGCAGCAGTTTCCACAGAACGTTACAAACTGGTACGCGAAGAAATCGTTCGTTGATGATGACTCTTTTTGCTGACACGGATCTGTCAGTTCGGTTGATCGATATCATCTGTTGCTATTGCTGTTTAGAAGTTTAG

Function

NR:

description
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU374947 False 3878 lncRNA 0.41 2 21330097 21334008
TU374952 False 2650 lncRNA 0.40 2 21331329 21334008
TU374949 True 2302 lncRNA 0.42 2 21331672 21334008

Neighbor

gene id symbol gene type direction distance location
trnas-gcu-4 NA coding upstream 16132 21313884 ~ 21313965 (+)
LOC110521056 LOC106607877 coding upstream 27901 21290133 ~ 21302196 (+)
LOC110522291 LOC106607878 coding upstream 46243 21272273 ~ 21283854 (+)
LOC110522292 LOC106607878 coding upstream 57869 21256010 ~ 21272228 (+)
LOC110522290 LOC106607876 coding upstream 102574 21215189 ~ 21227523 (+)
LOC110521058 tlr5 coding downstream 37774 21371782 ~ 21394789 (+)
LOC110522302 LOC106607888 coding downstream 147318 21481326 ~ 21498082 (+)
LOC110522305 LOC106607921 coding downstream 181725 21515733 ~ 21520261 (+)
LOC110521060 LOC106607633 coding downstream 192066 21526074 ~ 21556088 (+)
LOC110522301 adssl1 coding downstream 222476 21556484 ~ 21569799 (+)
G331213 NA non-coding upstream 11559 21316412 ~ 21318538 (+)
G331209 NA non-coding upstream 20421 21309355 ~ 21309676 (+)
G331151 NA non-coding upstream 123902 21205716 ~ 21206195 (+)
LOC110522289 LOC106607875 non-coding upstream 125133 21172284 ~ 21204980 (+)
G331169 NA non-coding upstream 131793 21198022 ~ 21198304 (+)
G331259 NA non-coding downstream 45877 21379885 ~ 21380161 (+)
G331266 NA non-coding downstream 57456 21391464 ~ 21391695 (+)
G331276 NA non-coding downstream 70994 21405002 ~ 21405620 (+)
G331277 NA non-coding downstream 71913 21405921 ~ 21406607 (+)
G331279 NA non-coding downstream 73449 21407457 ~ 21407690 (+)
G330771 NA other upstream 508940 20820668 ~ 20821157 (+)
G329626 NA other upstream 1076186 20252767 ~ 20253911 (+)
G329556 NA other upstream 1230041 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 2059572 19269334 ~ 19308960 (+)
LOC110522250 LOC106607827 other upstream 2061541 19258560 ~ 19268556 (+)
LOC110522308 LOC106607893 other downstream 349926 21683716 ~ 21701617 (+)
G332458 LOC106584613 other downstream 1164492 22498500 ~ 22498996 (+)
G332507 NA other downstream 1258922 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 1621871 22955879 ~ 22958196 (+)
ccdc167 ccdc167 other downstream 2411821 23745535 ~ 23748393 (+)

Expression

G331225 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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G331225 Expression in each Bioproject

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G331225 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network