G331320 (LOC106607886)


Basic Information

Item Value
gene id G331320
gene name LOC106607886
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 21473481 ~ 21477379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU375060
CTTCTAGATAAATCAAATATGACTAAGTGAAAACAACTTTTGCAAGTAGTAATGATCAAAATGACTTATCAAAGTTAgttgaaaaatacaaaatatttatatttccatTTACACTAAAATCAAAGACACACACAAGATCTAGTCCAACAAGAGCTGCTCTGCTTCCTCAAAAGCCTTATCCATTTCTTCAACTTCCAAGTAGAAATTCTCCCTCTCCTGCACCAGATGCTCCCGAGAATCGGTGAGAGCCTTCATGGTCTTTTGAACTTGTTAGTTGTGCACTTTGTTCTGTTGCCATGTCACCAAATGTCTGCAGTTCACGTAACAGATCTTGGGATACGTTCACCACCTCTCTTTGTTGATCCTCATTTTGCTGTGCAGTTTTTCCAATTTTCTCTCCCAAAACTGGATCAATATTTCCAGCAACTAGTAGCACATGGCAGTCCTTCAGTTGTTTCTGGACGTCTGCATTGGTTCCTTGGAGGTCACTGCATCGTTGTTCCAGCTGGGCAACTTTTTGCTGTGTTTCTGTAAGTTTTTTCTGCAGTTCTTCATTGGCTTCCAGTAAAAGTTGATTATGGCTCTTGAGTTCTGACTGCTGCCCATATCTGGTGGAAGGTCCTTTATGCACTTTGGCTACAACATTCTTTCTTGGTACATTCTCATTGAGAGGCTTGAAAATAGCAGTTTTTGGAAAGAAATTGAAGTCTGACGGTACAGCAGTCTCTTTGAAAACGTATTTATTGGCCGCCCTCTTCATTTCTGCAGCACTGCCAGCAGGTCGCACACACTTACTCTGTCCGCATCTAGGAATTTTCGATGCCATCAAActgctatgaaaatCCTTTACGGCCGTAGCTGTATCGAAGTGGCGTGAAAAGAGTATCCCAGCTCCAGAACTATCAGCAGGGAAAGACGTAGCTATATTCAACTCAAATGTACACCTCCACACCCACAGAATAAAACACTGAATGGGTAATATTCTGACATATCTGATTAATGTAGCAATAAAACAAAGCTTTCTTCCCGTATATTGTATTCAATAATAAAAACAGAGAAACTTACTTTAGAAAGCGCCCGTTCTGTTACAGCTAGCTAAGTGAAGGCGCCAGACGATTTGAAAATGTTGGGAACGTCACTTCCGTACCACGTTATATCAACACAGGAAATTACGTGgaggccttttttttttttttacagtgatgCCGACAGGGGACACACTGCTTCAATGCGAAGTGATTTGTGATTTACTTTTCCAAAGCAGCTGGTCCATGtcttaacattaataaatgtgagctcatggctgtcaaagattgtgtgaaactgaagatctcgtacaacgctgtgtactactcccttcacagaacattgaaaactggctctaaccagaatagaacgagtgggaggccccagtgcacaactgagcaagagtgtctagtttgacaaACAGAcacctcaactggcagcttcattaaatagtacccacaaacaccagtctcaaagtcaacagtgaagaggtgactccgggatgctggccttctacgcagagttgcaaagaaaaatctaTATCTCAGACTgggcaataaaaataaaagattaagatggcaaaagaacacagacactggacagaggaactctacctCGAAGGTGAGcattccggagtcgcctcttcacgttgagactggtgttttgtgagtactatttaatgaagctgccagttgcggacttgtgaggcgtctgtttctcaaatgagacactctaatgtacttgtcctcttgctcagttgtacaccggggcctcacactcctctttctattctgattagagacagtttgagctgttctgtgaagggagtagtacacagtattgtacaagatcttcagtttcttggcaatttctcacatggaatagccatcatttcccagaacaagaatagactgacgagtttcagaagaaagatgtttctttctggccattttgagcctgtaatcgaacccacaaatgctgatgctccagatactcaactagtctatagAAGGCAagatttattgcttctttaaatcaggacaacagttttcagctgtgctaacataattgcaaaatggttttctaatgatcaattggccttttaaaatgataaacttggattagcaaacacaatgtgccattggaacacaggagtgatggttgctgataatgggcctctgtacgcctctgtagatattcatttttttttttaaatcagccgtttccagccacaatagtcatttacaacattaacaatgtctacactgtatttc

Function

NR:

description
tropomyosin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375060 True 2300 lncRNA 0.41 9 21473481 21477379

Neighbor

gene id symbol gene type direction distance location
LOC110521058 tlr5 coding upstream 78692 21371782 ~ 21394789 (+)
trnas-gcu-4 NA coding upstream 159516 21313884 ~ 21313965 (+)
LOC110521056 LOC106607877 coding upstream 171285 21290133 ~ 21302196 (+)
LOC110522291 LOC106607878 coding upstream 189627 21272273 ~ 21283854 (+)
LOC110522292 LOC106607878 coding upstream 201253 21256010 ~ 21272228 (+)
LOC110522302 LOC106607888 coding downstream 3947 21481326 ~ 21498082 (+)
LOC110522305 LOC106607921 coding downstream 38354 21515733 ~ 21520261 (+)
LOC110521060 LOC106607633 coding downstream 48695 21526074 ~ 21556088 (+)
LOC110522301 adssl1 coding downstream 79105 21556484 ~ 21569799 (+)
LOC110522300 LOC106607890 coding downstream 102365 21579744 ~ 21647839 (+)
G331288 NA non-coding upstream 49869 21423408 ~ 21423612 (+)
G331285 NA non-coding upstream 53836 21419411 ~ 21419645 (+)
G331280 NA non-coding upstream 65496 21407772 ~ 21407985 (+)
G331279 NA non-coding upstream 65791 21407457 ~ 21407690 (+)
G331277 NA non-coding upstream 66874 21405921 ~ 21406607 (+)
G331913 NA non-coding downstream 279739 21757118 ~ 21757385 (+)
G331914 NA non-coding downstream 280342 21757721 ~ 21758033 (+)
G331921 NA non-coding downstream 286750 21764129 ~ 21780103 (+)
G331930 NA non-coding downstream 316416 21793795 ~ 21796979 (+)
G330771 NA other upstream 652324 20820668 ~ 20821157 (+)
G329626 NA other upstream 1219570 20252767 ~ 20253911 (+)
G329556 NA other upstream 1373425 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 2202956 19269334 ~ 19308960 (+)
LOC110522250 LOC106607827 other upstream 2204925 19258560 ~ 19268556 (+)
LOC110522308 LOC106607893 other downstream 206555 21683716 ~ 21701617 (+)
G332458 LOC106584613 other downstream 1021121 22498500 ~ 22498996 (+)
G332507 NA other downstream 1115551 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 1478500 22955879 ~ 22958196 (+)
ccdc167 ccdc167 other downstream 2268450 23745535 ~ 23748393 (+)

Expression


Co-expression Network