G331921


Basic Information

Item Value
gene id G331921
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 21764129 ~ 21780103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU375732
ttttgaaatgAGTTCCAATGTAATTCTGGCACAAAACGTTTGTACCACTACAGTCGATATGgttacaaaacaaacatttactgAATAAATGAATGTACTTTAGTACCTCATGACAACAAGACAAGTAAACATAAAAACCCAAAATGGGGGAAGAAGTATATTGCATTAAAAATAAAAGAGTAGATTCTATTATACAAAAGTTCTGGCATTTACAAAGGCAGCCTTATTTGTTGCTTGTGTCTATATAAATATAAATCTCTAGATAAAGCGTGGATATACGCTGATATGGTCCCTCTATTTTAGCAGACATGCGACGAGGGGTGGGGCTTTAGCCTGAGTCGATAACCTTCTCTGATCTCTGTGACAACCCCATGCCGCTCCAAGACAACCAGAATAATACTAGTTCTCAACTCGACTAGTTTCAAGGAGTCCAAACCCCACCCAAGCTAGTATACATTTCAGTTCAGCTTAACTTTCTTATTACAATGTGGTTCAATGCTAAGGATCCCTTTAGTGTGACCTTAATCCTTATCATTCATTTTATTTACTTTAAGTAAAAGTAGATAAAGTGCATGCAGCACATGCTTGGGGTTCTGAATGATTCTGAAGCTTGCTACAGTTGAAAGATAGCTACATATGATTCTGTACAGTACGTAGAGGTCTACTGGCTTCCCTTACTAAAGAAAGATGCCTTCTGAGACCCTCAACTAAAACCCAACATCTCTTCATAACATACACAATGATACAGGGAAAAGAGAGCTTCCGTAAGACTCGATGATTCCTGCCAACTACACCAGACTTCTACTAGTGAGGACTGGCACTACCATTGACTTACAGCGGCCCACCTGGGATATCTAGTTGCTGTCTATAGGTGTCAGGTTGCCTTGATACAGCGCTATCGCAAGCTGATGCTACAACGTCCACTTAGCTAGGTACTAGCCTATACTTGTCTGAAACCTTATCACTGATGTTACTATATTACTACTCAGGCCTAGGACAGACAAAAACTACTAAATGGCTACTCAAGCTATAGGATGATGGGCTTGCTAATGCTTCAACATTATCCCCAAGCATGGCGTAACAACATCTACACTCTTTCTTCCTAACACGATCCATAATGCTGTACTTCTGTGGACAGGCTGGCTGCTGTAGAACCGATGCTCTGGGTGTACCTGAGAGTAGTGATAGACCAGACCTGATGGGCTTGTGTGTTATTGTAATTATTGTGCACTGAGCTTAGTTACTGCTGATGATTTGACAGGATTGTACAGAGGTGATATTATAGACAGTGCTGAAGGTTAGTGGTTGTGGATGTAGACAATgggtttttgaaatatttaagtTTGAAAAATCTCTCCTGCTTTTGTACAGAAACCTCTCTACATCCTTTAAATTGTCTACATAAGTACATGCAACGATTTGGTGATCTACTACTGTTGCTACGTCCACTAGACAAGACAAGATAACATGTCATCACTAGATCCCCAACATTTACACAACATCAAAGAGTTATTAGTTCTAAACACAACATGGCAGGATCAACTCACAGcaatttaaccattattttacatTCTAATATTATTGCTGTAACCCTTCACTTACTGTACTTTATAGAGGAGGTATGAGGCAAGTATACAGGGTGATGTCATGTGACATCCCTAGGAGGGGTCAGAGGTTGACGGCTAGTGTTTACATAACAATGGTGATGTTATAATAAGTGGCCACACACTGCTGGCAGTAAAAAGTCCCTCATCTCTCTAAAACTACAGAAAAATAAAAAGCTGTGCAAGTTTGTTCTTTGTTACCTTCTTACTAACTTCTGTCATTATTTTTCCCTTTTTTGAGAAGTtatcacttaaaaaaaaaaaagttccatCTGTGCAATTTCACATTGTAGTATACAAACAATGCTTTATAATATTTGACCGATGTAGCTCCCTAATCCTATGTAGCAGCATGCAAAGACGTGCACAACCTTTAAGGGGGTTTATGAAACATAAAACCTAAGAGATGGTGAAAACAATCAATCATTAATTGCTCTGAACCAATAGCTCTCTGATAAAGTGGCGAGCTCCCATTGGACTGATCCCGCCATAGTTAGACTGGTTCAGGAAGCCTTATTTTCCCATCCCTCCTATATATACCCACACACAGAGGGAATTAGCCAGTTTAACAGAGAAAAGCTGCATCCCAATTGTCAAGTGACTTCTTCTCCTTGTCTCCTCACCCTAACCTTTAATGATGTGAAAAGGCAGGCAGGTGAATGTAGAGGAATTTGTTTTCCATCTCCAGTTCCTTCACATCAGTGCAAACGGAGGATAGAAGATGAGAACAGCAAGCCACTTTAGACAATGGAGAGTAATACTGCTAACATGCAGAGAAGACATTAAAACGAATGTGAGATATTAGCATTAcaacattaaaaaaacatttaagatTACACGTAAAAGGTGAGAAGATTATAAGGTAAAACAGGCATTAAAATGTGAATCTCAAAAGGTTGCGGGAAAAGTTGTTGTGGAGAAAATAAATACTCCATCAGGAAGAGTCCACCTTATTAGGGGGGTGGGTGACTCCTTCCATTGGTATGTTCAAGAACTCTGCAGCTCCTGAGCGCAGGGCCAGCTTTAGCCTTTTGGGGGCTCTAAGAGCGGCAAATTTGTTTCATGGGACCCCTCTTGATGACAGTCAGAAAAATGCATGTTTTAAAGataatttcctgcagttctacacattttgccatggggcagagagaacatttagcaattTTCTACGAAAAATTCATGCAATTCTAGTtctgccatggggcagagagacatTATTGCATTTCTACCCATTTTACCATGGGGTGAATAATTTCCTACAATTCATCACATTTTACCATGGCTTATGCCATGTTattgatatctgagtgagagtgactaacaaaatcaatgagggccccctggaggtcagggacaGTAAGTTGAGTtcctaaaaaataaaaagtgcTTATGCCTTGAGTGTGTTCAGAGTGTTGTAGAACAGGTGGctaacaaaatcaatgagggccccctggaggtcagggacaGTAAGTTGAGTtcctaaaaaataaaaagtgcTTATGCCTTGAGTGTGTTCAGAGTGTTGTAGAACAGGTGGCTCCTCCACTGGGTTTATGTGGGACACAGCACTGTAGGGACAAGAAGAACACCCAGAAAACAGCTGTCAACCTAAAATGATGTACCACATGGAAGAGAGCAATTAAGAACGGACGGGAGGGTGAGCAAGAGCGTGTGTGTGAGTAGGAGGAGGGAGTGTGTGTAAGATAGAGGGTAAGTAAAGTAAGTACACCATAATCACAATCACAGCAcaggtacactacactacagcacagagcCAGGGAAGGGGGCTGTCTCGGAGGTGTGTGAGAGCGGGCTCTCCACAcattgcgtgtgtgtgcgtttccTGTATgcatgtcattgtgtgtgtgtgtgtgtggctcacaAACCTCCACCTTTCTCATACTAGAACTAGCGACAGAGCAGCGCAGCAGAGGCGAGAAACAAGGAGGGTAAAGGTCAAGATGAAAGGCTTCGAAAAACCCTGCAGGCCTTCAGTGAACAAAGAACACATTGGAAGTAGACCCTCCTAATAACATGTGTCCTAACAGGACCCTTGTGTCCTGCAGCATCTTTCTCCGGCACTAGGTCATAGTGAGACTGTCAATCTAGACAAAAGCTCTGTTTTGAATGGGAGCAATGTTTCCTCAAAGTAATTGAGTATCTTTGAGAATGTACACCTTGTGTGGTAATGTGTGGTGTTTTGAACGGGAGTAAGAGTTTTGAAACTGGTAGGGAGGGAGTACCTTTGAGAATGTAGTCTGTTAGGAGGCTGGGTACCTTCTCACTGTCCTCCCGCATGGCATGCAGAACTGCATGGAGGGAAGAGCAAAAAATGAAAAAAGATTTGGGATGAGTTACTATCATGGTCATAATAGGACATTTCGGTCTTCACATTACAGCTTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375732 True 4008 lncRNA 0.41 3 21764129 21780103

Neighbor

gene id symbol gene type direction distance location
LOC110522310 LOC106607894 coding upstream 17024 21701928 ~ 21747105 (+)
LOC110522308 LOC106607893 coding upstream 62512 21683716 ~ 21701617 (+)
LOC110522307 LOC106607891 coding upstream 81932 21649885 ~ 21682197 (+)
LOC110522300 LOC106607890 coding upstream 116290 21579744 ~ 21647839 (+)
LOC110522301 adssl1 coding upstream 194330 21556484 ~ 21569799 (+)
mrps18a LOC106607900 coding downstream 309888 22089991 ~ 22099593 (+)
pou3f2a LOC106571484 coding downstream 401844 22181947 ~ 22185746 (+)
LOC110522322 LOC106607944 coding downstream 439317 22219420 ~ 22262486 (+)
LOC110522327 LOC106607943 coding downstream 526855 22306958 ~ 22312299 (+)
LOC110522328 elovl4 coding downstream 640495 22420598 ~ 22432975 (+)
G331914 NA non-coding upstream 6096 21757721 ~ 21758033 (+)
G331913 NA non-coding upstream 6744 21757118 ~ 21757385 (+)
G331320 LOC106607886 non-coding upstream 286750 21473481 ~ 21477379 (+)
G331288 NA non-coding upstream 340517 21423408 ~ 21423612 (+)
G331930 NA non-coding downstream 13692 21793795 ~ 21796979 (+)
G331992 NA non-coding downstream 61369 21841472 ~ 21841674 (+)
G331993 NA non-coding downstream 61684 21841787 ~ 21841993 (+)
G332010 NA non-coding downstream 75044 21855147 ~ 21855402 (+)
G332023 NA non-coding downstream 87594 21867697 ~ 21867993 (+)
G330771 NA other upstream 942972 20820668 ~ 20821157 (+)
G329626 NA other upstream 1510218 20252767 ~ 20253911 (+)
G329556 NA other upstream 1664073 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 2493604 19269334 ~ 19308960 (+)
G332458 LOC106584613 other downstream 718397 22498500 ~ 22498996 (+)
G332507 NA other downstream 812827 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 1175776 22955879 ~ 22958196 (+)
ccdc167 ccdc167 other downstream 1965726 23745535 ~ 23748393 (+)
G334116 NA other downstream 2053718 23833821 ~ 23837875 (+)

Expression


Co-expression Network